Parsing mpileup: HCC1395_BL.mpileup.gz
Found 20 positions with indel observations
Annotating VCF: HCC1395_BL.haplotyper.split.vcf.gz
[E::idx_find_and_load] Could not retrieve index file for 'HCC1395_BL.haplotyper.split.vcf.gz'
Output written to: HCC1395_BL.entropy.vcf