cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_tissue --normal_sample Sig_18_Blood --max_event_count 5 -v custom_Sig_18_tumor_normal.tnseq.vcf.gz --contamination custom_Sig_18_tumor_normal.tnseq.contamination_data.tsv --tumor_segments custom_Sig_18_tumor_normal.tnseq.segments --orientation_priors custom_Sig_18_tumor_normal.tnseq.orientation_data.tsv custom_Sig_18_tumor_normal.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:239000001, elapsed 0.1s, est remaining 1.1s, peak mem 420MB, user 0.2s, sys 2.2s, output queue size 98
progress 10% @chr1:174000001, elapsed 0.1s, est remaining 0.9s, peak mem 420MB, user 0.4s, sys 6.0s, output queue size 248
progress 15% @chr3:60000001, elapsed 0.1s, est remaining 0.8s, peak mem 420MB, user 0.6s, sys 9.7s, output queue size 409
progress 20% @chr4:43000001, elapsed 0.2s, est remaining 0.7s, peak mem 420MB, user 0.8s, sys 13.9s, output queue size 571
progress 25% @chr5:3000001, elapsed 0.2s, est remaining 0.7s, peak mem 420MB, user 0.9s, sys 18.0s, output queue size 732
progress 30% @chr5:173000001, elapsed 0.3s, est remaining 0.6s, peak mem 420MB, user 1.2s, sys 22.3s, output queue size 894
progress 35% @chr6:118000001, elapsed 0.3s, est remaining 0.6s, peak mem 420MB, user 1.5s, sys 26.3s, output queue size 1055
progress 40% @chr8:11000001, elapsed 0.4s, est remaining 0.6s, peak mem 420MB, user 1.8s, sys 30.6s, output queue size 1216
progress 45% @chr8:137000001, elapsed 0.4s, est remaining 0.5s, peak mem 420MB, user 2.0s, sys 34.6s, output queue size 1378
progress 50% @chr10:46000001, elapsed 0.4s, est remaining 0.4s, peak mem 420MB, user 2.3s, sys 38.6s, output queue size 1539
progress 55% @chr10:91000001, elapsed 0.5s, est remaining 0.4s, peak mem 420MB, user 2.6s, sys 42.5s, output queue size 1701
progress 60% @chr12:88000001, elapsed 0.5s, est remaining 0.4s, peak mem 420MB, user 2.8s, sys 46.6s, output queue size 1863
progress 65% @chr10:57000001, elapsed 0.6s, est remaining 0.3s, peak mem 420MB, user 3.1s, sys 50.6s, output queue size 2024
progress 70% @chr15:39000001, elapsed 0.6s, est remaining 0.3s, peak mem 420MB, user 3.3s, sys 54.0s, output queue size 2186
progress 75% @chr14:39000001, elapsed 0.7s, est remaining 0.2s, peak mem 420MB, user 3.5s, sys 57.1s, output queue size 2348
progress 80% @chr18:46000001, elapsed 0.7s, est remaining 0.2s, peak mem 420MB, user 4.0s, sys 60.1s, output queue size 2510
progress 85% @chr18:56000001, elapsed 0.7s, est remaining 0.1s, peak mem 420MB, user 4.2s, sys 62.7s, output queue size 2672
progress 90% @chrX:130000001, elapsed 0.8s, est remaining 0.1s, peak mem 420MB, user 4.5s, sys 65.3s, output queue size 2822
progress 95% @chrX:110000001, elapsed 0.8s, est remaining 0.0s, peak mem 420MB, user 4.7s, sys 68.7s, output queue size 3380
progress 100% @HLA-DRB1*11:01:01:1, elapsed 0.9s, est remaining 0.0s, peak mem 420MB, user 4.9s, sys 74.1s, output queue size 2219
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 95376
output file size: 77088
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 1065 calls 0.006 user 0.000 sys 0.029 real
"predict_filter": 355 calls 0.000 user 0.013 sys 0.146 real
advance: 3219322 calls 0.717 user 33.534 sys 48.865 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.007 user 0.003 sys 1.006 real
fetch_ref: 876 calls 0.001 user 0.017 sys 0.332 real
idle: 20057 calls 0.480 user 0.144 sys 300.128 real
init: 1 calls 0.260 user 0.049 sys 0.511 real
overall: 440651776 mem 6.266 user 77.089 sys 2.614 real