custom_Sig_18_tumor_normal.strelka.somatic_indels_custom.ann_snpEff.genes.txt

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Filename: custom_Sig_18_tumor_normal.strelka.somatic_indels_custom.ann_snpEff.genes.txt
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Published: Jun 04, 2026 7:55 PM
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# The following table is formatted as tab separated values. 
#GeneName	GeneId	TranscriptId	BioType	variants_impact_HIGH	variants_impact_LOW	variants_impact_MODERATE	variants_impact_MODIFIER	variants_effect_3_prime_UTR_variant	variants_effect_5_prime_UTR_variant	variants_effect_conservative_inframe_deletion	variants_effect_disruptive_inframe_deletion	variants_effect_disruptive_inframe_insertion	variants_effect_downstream_gene_variant	variants_effect_frameshift_variant	variants_effect_intron_variant	variants_effect_non_coding_transcript_exon_variant	variants_effect_splice_region_variant	variants_effect_upstream_gene_variant
AGPAT3	ENSG00000160216	ENST00000291572	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
APP	ENSG00000142192	ENST00000346798	protein_coding	0	0	1	1	0	0	0	1	0	0	0	1	0	0	0
BACE2	ENSG00000182240	ENST00000330333	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
BACE2-IT1	ENSG00000224388	ENST00000433378		0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
C21orf91	ENSG00000154642	ENST00000284881	protein_coding	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0
C21orf91-OT1	ENSG00000240770	ENST00000430815		0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
CBR3	ENSG00000159231	ENST00000290354	protein_coding	0	0	0	2	0	0	0	0	0	1	0	1	0	0	0
CBR3-AS1	ENSG00000236830	ENST00000432988	retained_intron	0	0	0	2	0	0	0	0	0	0	0	1	1	0	0
CCT8	ENSG00000156261	ENST00000286788	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
CFAP410	ENSG00000160226	ENST00000397956	protein_coding	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
CHAF1B	ENSG00000159259	ENST00000314103	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
COL18A1	ENSG00000182871	ENST00000359759	protein_coding	1	0	0	1	0	0	0	0	0	0	1	1	0	0	0
COL6A1	ENSG00000142156	ENST00000361866	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
CRYZL1	ENSG00000205758	ENST00000381554	protein_coding	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0
DONSON	ENSG00000159147	ENST00000303071	protein_coding	0	0	0	4	0	0	0	0	0	2	0	2	0	0	0
DOP1B	ENSG00000142197	ENST00000399151	protein_coding	0	0	1	2	0	0	0	1	0	0	0	2	0	0	0
DSCAM	ENSG00000171587	ENST00000400454	protein_coding	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0
ENSG00000184441	ENSG00000184441	ENST00000448927		0	0	0	1	0	0	0	0	0	0	0	0	1	0	0
ENSG00000227698	ENSG00000227698	ENST00000432411		0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
ENSG00000241728	ENSG00000241728	ENST00000422357		0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
ENSG00000244676	ENSG00000244676	ENST00000428689		0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
ENSG00000249209	ENSG00000249209	ENST00000429238	protein_coding	0	0	0	4	0	0	0	0	0	1	0	3	0	0	0
ENSG00000251778	ENSG00000251778	ENST00000515969	snoRNA	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
ENSG00000273840	ENSG00000273840	ENST00000612267		0	1	0	2	0	0	0	0	0	0	0	3	0	1	0
ENSG00000286549	ENSG00000286549	ENST00000668861		0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
ERG	ENSG00000157554	ENST00000398919	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
FTCD	ENSG00000160282	ENST00000397748	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
FTCD-AS1	ENSG00000237338	ENST00000446649		0	0	0	1	0	0	0	0	0	1	0	0	0	0	0
GABPA	ENSG00000154727	ENST00000354828	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
GART	ENSG00000159131	ENST00000381815	protein_coding	0	0	0	2	0	0	0	0	0	0	0	1	0	0	1
GET1-SH3BGR	ENSG00000285815	ENST00000647779	protein_coding	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0
HMGN1P2	ENSG00000229046	ENST00000445197	processed_pseudogene	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
HSPD1P7	ENSG00000215005	ENST00000447985	processed_pseudogene	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0
HUNK	ENSG00000142149	ENST00000270112	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
IFNGR2	ENSG00000159128	ENST00000381995	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
IGSF5	ENSG00000183067	ENST00000380588	protein_coding	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0
ITSN1	ENSG00000205726	ENST00000381318	protein_coding	1	0	0	1	0	0	0	0	0	0	1	1	0	0	0
JAM2	ENSG00000154721	ENST00000400532	protein_coding	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0
KRTAP19-3	ENSG00000244025	ENST00000334063	protein_coding	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
KRTAP19-4	ENSG00000186967	ENST00000334058	protein_coding	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0
KRTAP19-5	ENSG00000186977	ENST00000334151	protein_coding	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0
KRTAP25-1	ENSG00000232263	ENST00000416044	protein_coding	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
LINC01426	ENSG00000234380	ENST00000420877		0	0	0	1	0	0	0	0	0	1	0	0	0	0	0
LIPI	ENSG00000188992	ENST00000681601	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
LTN1	ENSG00000198862	ENST00000614971	protein_coding	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0
MIR6815	ENSG00000275167	ENST00000611994	miRNA	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
MORC3	ENSG00000159256	ENST00000400485	protein_coding	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0
MX2	ENSG00000183486	ENST00000330714	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
N6AMT1	ENSG00000156239	ENST00000303775	protein_coding	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0
NCAM2	ENSG00000154654	ENST00000400546	protein_coding	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0
NDUFV3	ENSG00000160194	ENST00000354250	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
PCNT	ENSG00000160299	ENST00000359568	protein_coding	1	0	0	2	0	0	0	0	0	0	1	2	0	0	0
PFKL	ENSG00000141959	ENST00000349048	protein_coding	0	0	0	2	0	0	0	0	0	1	0	1	0	0	0
PLAC4	ENSG00000280109	ENST00000645185		0	0	0	1	0	0	0	0	0	0	0	0	1	0	0
PRDM15	ENSG00000141956	ENST00000269844	protein_coding	0	0	0	3	0	1	0	0	0	0	0	2	0	0	0
PRMT2	ENSG00000160310	ENST00000355680	protein_coding	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0
RIMKLBP1	ENSG00000189089	ENST00000408914	processed_pseudogene	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0
RNGTTP1	ENSG00000237731	ENST00000420965	processed_pseudogene	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
RRP1	ENSG00000160214	ENST00000497547	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
RUNX1	ENSG00000159216	ENST00000300305	protein_coding	0	0	0	2	1	0	0	0	0	0	0	0	0	0	1
SAMSN1	ENSG00000155307	ENST00000647101	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
SCAF4	ENSG00000156304	ENST00000286835	protein_coding	0	0	0	3	0	0	0	0	0	0	0	3	0	0	0
SETD4	ENSG00000185917	ENST00000332131	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
SH3BGR	ENSG00000185437	ENST00000333634	protein_coding	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0
SON	ENSG00000159140	ENST00000356577	protein_coding	0	2	0	2	0	0	0	0	0	1	0	2	0	2	1
SPATC1L	ENSG00000160284	ENST00000291672	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
SYNJ1	ENSG00000159082	ENST00000433931	protein_coding	0	1	0	2	0	0	0	0	0	0	0	3	0	1	0
TIAM1	ENSG00000156299	ENST00000286827	protein_coding	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0
TMPRSS15	ENSG00000154646	ENST00000284885	protein_coding	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0
TMPRSS2	ENSG00000184012	ENST00000679263	protein_coding	0	0	0	5	0	0	0	0	0	0	0	5	0	0	0
TPTE	ENSG00000274391	ENST00000618007	protein_coding	0	1	0	2	0	0	0	0	0	0	0	3	0	1	0
TRAPPC10	ENSG00000160218	ENST00000291574	protein_coding	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
TTC3	ENSG00000182670	ENST00000354749	protein_coding	1	1	0	2	0	0	0	0	0	0	1	3	0	1	0
U2AF1	ENSG00000160201	ENST00000291552	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
UMODL1	ENSG00000177398	ENST00000408989	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
USP16	ENSG00000156256	ENST00000334352	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
USP25	ENSG00000155313	ENST00000400183	protein_coding	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
ZBTB21	ENSG00000173276	ENST00000310826	protein_coding	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0