cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --max_event_count 5 -v Sig_18_Blood.tnseq_tumor_only.vcf.gz --contamination Sig_18_Blood.tnseq_tumor_only.contamination_data.tsv --tumor_segments Sig_18_Blood.tnseq_tumor_only.segments --orientation_priors Sig_18_Blood.tnseq_tumor_only.orientation_data.tsv Sig_18_Blood.tnseq_tumor_only.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:232000001, elapsed 0.1s, est remaining 1.1s, peak mem 417MB, user 0.2s, sys 0.2s, output queue size 146
progress 10% @chr2:189000001, elapsed 0.1s, est remaining 1.0s, peak mem 418MB, user 0.4s, sys 0.5s, output queue size 277
progress 15% @chr3:8000001, elapsed 0.1s, est remaining 0.8s, peak mem 418MB, user 0.6s, sys 1.2s, output queue size 439
progress 20% @chr4:11000001, elapsed 0.2s, est remaining 0.7s, peak mem 418MB, user 1.0s, sys 2.2s, output queue size 601
progress 25% @chr4:101000001, elapsed 0.2s, est remaining 0.6s, peak mem 420MB, user 1.3s, sys 3.5s, output queue size 762
progress 30% @chr5:128000001, elapsed 0.2s, est remaining 0.6s, peak mem 420MB, user 1.7s, sys 4.6s, output queue size 924
progress 35% @chr6:138000001, elapsed 0.3s, est remaining 0.6s, peak mem 420MB, user 1.9s, sys 7.5s, output queue size 1082
progress 40% @chr7:110000001, elapsed 0.3s, est remaining 0.5s, peak mem 420MB, user 2.1s, sys 11.6s, output queue size 1239
progress 45% @chr8:106000001, elapsed 0.4s, est remaining 0.5s, peak mem 423MB, user 2.3s, sys 16.9s, output queue size 1400
progress 50% @chr9:118000001, elapsed 0.4s, est remaining 0.4s, peak mem 423MB, user 2.5s, sys 21.3s, output queue size 1562
progress 55% @chr9:11000001, elapsed 0.5s, est remaining 0.4s, peak mem 423MB, user 2.8s, sys 26.9s, output queue size 1512
progress 60% @chr12:60000001, elapsed 0.5s, est remaining 0.3s, peak mem 423MB, user 3.2s, sys 32.6s, output queue size 1674
progress 65% @chr13:4000001, elapsed 0.5s, est remaining 0.3s, peak mem 423MB, user 3.6s, sys 38.5s, output queue size 1836
progress 70% @chr13:23000001, elapsed 0.6s, est remaining 0.3s, peak mem 423MB, user 3.9s, sys 44.4s, output queue size 1998
progress 75% @chr16:24000001, elapsed 0.6s, est remaining 0.2s, peak mem 423MB, user 4.3s, sys 50.8s, output queue size 2160
progress 80% @chr18:29000001, elapsed 0.7s, est remaining 0.2s, peak mem 423MB, user 4.5s, sys 57.0s, output queue size 2322
progress 85% @chr20:13000001, elapsed 0.7s, est remaining 0.1s, peak mem 423MB, user 4.9s, sys 62.7s, output queue size 2484
progress 90% @chrX:46000001, elapsed 0.8s, est remaining 0.1s, peak mem 423MB, user 5.2s, sys 68.7s, output queue size 2646
progress 95% @chrY:17000001, elapsed 0.8s, est remaining 0.0s, peak mem 423MB, user 5.6s, sys 75.2s, output queue size 2981
progress 100% @HLA-DQB1*05:03:01:02:1, elapsed 0.9s, est remaining 0.0s, peak mem 423MB, user 5.8s, sys 87.5s, output queue size 6231
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 000a06d1
features: 1f8bfbff fffab20b
extended: f1bf27eb 1b407f7e
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 57860
output file size: 46926
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 642 calls 0.002 user 0.000 sys 0.013 real
"predict_filter": 214 calls 0.009 user 0.034 sys 0.139 real
advance: 3219322 calls 1.110 user 35.164 sys 42.884 real
done: 1 calls 0.001 user 0.000 sys 0.006 real
execute: 1 calls 0.022 user 0.001 sys 0.969 real
fetch_ref: 624 calls 0.002 user 0.077 sys 0.487 real
idle: 20057 calls 0.866 user 0.605 sys 383.519 real
init: 1 calls 0.397 user 0.204 sys 0.888 real
overall: 443809792 mem 7.700 user 91.993 sys 2.971 real