File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/7906ffffc44b8674f03c2e08a816da/.command.log
Size
1.2 KB
Task
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (Sig_18_Blood)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/6df67cfb2da492030ef07a6dcf2928/Sig_18_Blood.GERMLINE.merged.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/5ea191eca61106a572a4704843ef01/chip_pon.chip_pon.harmonized.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/7906ffffc44b8674f03c2e08a816da/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/7906ffffc44b8674f03c2e08a816da/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/5ea191eca61106a572a4704843ef01/chip_pon.chip_pon.harmonized.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/6df67cfb2da492030ef07a6dcf2928/Sig_18_Blood.GERMLINE.merged.vcf.gz
==> STAGING COMPLETE (6 inputs)

[INFO] Reading target VCF: Sig_18_Blood.GERMLINE.merged.vcf.gz
[INFO] Reading source VCF: chip_pon.chip_pon.harmonized.vcf.gz
[INFO] Adding header fields with prefix 'CHIP_PON' for: FRACTION
[INFO] Building source variant lookup...
[INFO] Found 365410 variants in source VCF
[INFO] Processing target variants and merging characteristics...
[INFO] Complete! Processed 321 variants, matched 261 (81.3%)
[SUCCESS] VCF merging completed successfully!