File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/e5f9e499e2398646b31d9e6edf05fc/.command.err
Size
7.1 KB
Attempt
/// MultiQC 🔍 v1.33

            config | Loading config settings from: multiqc_config.yml
            config | Config 'custom_logo' path not found, skipping (nf-core-sarek_logo_light.png)
     version_check | MultiQC Version v1.35 now available!
       file_search | Search path: /tmp/nxf.uMOsqH3Syc
       file_search | Only using modules: custom_content, fastqc, fastp, picard, samtools, mosdepth, gatk, bcftools, vcftools, snpeff, vep
    custom_content | nf-core-sarek-methods-description: Found 1 sample (html)
    custom_content | altera-sarek-summary: Found 1 sample (html)
          samtools | Found 4 stats reports
          mosdepth | Found reports for 4 samples
        validation | mosdepth/mosdepth.py: warnings while parsing barplot.pconfig[id='mosdepth-coverage-per-contig-single'] {id: mosdepth-coverage-per-contig-single, title: Mosdepth: Coverage per contig, xlab: Sample, ylab: Average Coverage, tt_suffix: x, hide_zero_cats: False, categories: True}:
• 'categories': unrecognized field. Available fields: id, title, subtitle, anchor, height, width, square, logswitch, logswitch_active, logswitch_label, cpswitch, cpswitch_c_active, cpswitch_counts_label, cpswitch_percent_label, xlog, ylog, data_labels, xlab, ylab, xsuffix, ysuffix, tt_suffix, xlab_format, ylab_format, tt_label, x_decimals, y_decimals, tt_decimals, xmin, xmax, ymin, ymax, x_clipmin, x_clipmax, y_clipmin, y_clipmax, save_data_file, showlegend, x_minrange, y_minrange, x_bands, y_bands, x_lines, y_lines, series_label, flat_if_very_large, stacking, hide_zero_cats, sort_samples, cluster_samples, cluster_method, cluster_switch_clustered_active, use_legend, suffix, lab_format, sample_groups
          bcftools | Found 12 stats reports
          vcftools | Found 12 TsTv.count reports
          vcftools | Found 12 TsTv.qual reports
            snpeff | Found 12 reports
               vep | Found 12 VEP summaries
       file_search | Only using modules: samtools, mosdepth, bcftools, vcftools, snpeff, vep, nf-core-sarek-methods-description, altera-sarek-summary
     write_results | Rendering plots. Export plots to formats png, svg, pdf is requested, so it might take a while. To disable plot export, set `export_plots: false` in config, or remove the `--export-plots` command line flag
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '77,175,74' to RGB: input #77,175,74 is not in #RRGGBB format
        mqc_colour | Error converting color '77,175,74' to RGB: input #77,175,74 is not in #RRGGBB format
        mqc_colour | Error converting color '152,78,163' to RGB: input #152,78,163 is not in #RRGGBB format
        mqc_colour | Error converting color '152,78,163' to RGB: input #152,78,163 is not in #RRGGBB format
        mqc_colour | Error converting color '152,78,163' to RGB: input #152,78,163 is not in #RRGGBB format
        mqc_colour | Error converting color '152,78,163' to RGB: input #152,78,163 is not in #RRGGBB format
        mqc_colour | Error converting color '255,127,0' to RGB: input #255,127,0 is not in #RRGGBB format
        mqc_colour | Error converting color '255,127,0' to RGB: input #255,127,0 is not in #RRGGBB format
        mqc_colour | Error converting color '255,127,0' to RGB: input #255,127,0 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '55,126,184' to RGB: input #55,126,184 is not in #RRGGBB format
        mqc_colour | Error converting color '77,175,74' to RGB: input #77,175,74 is not in #RRGGBB format
        mqc_colour | Error converting color '77,175,74' to RGB: input #77,175,74 is not in #RRGGBB format
        mqc_colour | Error converting color '77,175,74' to RGB: input #77,175,74 is not in #RRGGBB format
        mqc_colour | Error converting color '77,175,74' to RGB: input #77,175,74 is not in #RRGGBB format
        mqc_colour | Error converting color '152,78,163' to RGB: input #152,78,163 is not in #RRGGBB format
        mqc_colour | Error converting color '152,78,163' to RGB: input #152,78,163 is not in #RRGGBB format
        mqc_colour | Error converting color '152,78,163' to RGB: input #152,78,163 is not in #RRGGBB format
        mqc_colour | Error converting color '152,78,163' to RGB: input #152,78,163 is not in #RRGGBB format
        mqc_colour | Error converting color '152,78,163' to RGB: input #152,78,163 is not in #RRGGBB format
        mqc_colour | Error converting color '152,78,163' to RGB: input #152,78,163 is not in #RRGGBB format
        mqc_colour | Error converting color '152,78,163' to RGB: input #152,78,163 is not in #RRGGBB format
        mqc_colour | Error converting color '152,78,163' to RGB: input #152,78,163 is not in #RRGGBB format
        mqc_colour | Error converting color '255,127,0' to RGB: input #255,127,0 is not in #RRGGBB format
        mqc_colour | Error converting color '255,127,0' to RGB: input #255,127,0 is not in #RRGGBB format
        mqc_colour | Error converting color '255,127,0' to RGB: input #255,127,0 is not in #RRGGBB format
        mqc_colour | Error converting color '255,127,0' to RGB: input #255,127,0 is not in #RRGGBB format
        mqc_colour | Error converting color '255,127,0' to RGB: input #255,127,0 is not in #RRGGBB format
        mqc_colour | Error converting color '255,127,0' to RGB: input #255,127,0 is not in #RRGGBB format
     write_results | Data        : multiqc_data
     write_results | Report      : multiqc_report.html
     write_results | Plots       : multiqc_plots
           multiqc | MultiQC complete