multiqc_data/multiqc_sources.txt - Workdir - NFCORE_SAREK:SAREK:MULTIQC

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Filename: multiqc_data/multiqc_sources.txt
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/e5f9e499e2398646b31d9e6edf05fc/multiqc_data/multiqc_sources.txt
Size: 6.6 KB
Task: NFCORE_SAREK:SAREK:MULTIQC
Attempt
Content

Module	Section	Sample Name	Source
Samtools Flagstat	stats	HCC1395_BL	/tmp/nxf.uMOsqH3Syc/4/HCC1395_BL.stats
Samtools Flagstat	stats	HCC1395_tumor	/tmp/nxf.uMOsqH3Syc/3/HCC1395_tumor.stats
Samtools Flagstat	stats	Sig_18_Blood	/tmp/nxf.uMOsqH3Syc/5/Sig_18_Blood.stats
Samtools Flagstat	stats	Sig_18_tissue	/tmp/nxf.uMOsqH3Syc/10/Sig_18_tissue.stats
Mosdepth	genome_results	HCC1395_BL	/tmp/nxf.uMOsqH3Syc/13/HCC1395_BL.mosdepth.region.dist.txt
Mosdepth	genome_results	HCC1395_tumor	/tmp/nxf.uMOsqH3Syc/9/HCC1395_tumor.mosdepth.region.dist.txt
Mosdepth	genome_results	Sig_18_Blood	/tmp/nxf.uMOsqH3Syc/11/Sig_18_Blood.mosdepth.region.dist.txt
Mosdepth	genome_results	Sig_18_tissue	/tmp/nxf.uMOsqH3Syc/6/Sig_18_tissue.mosdepth.region.dist.txt
Bcftools	stats	HCC1395_BL	/tmp/nxf.uMOsqH3Syc/40/HCC1395_BL.bcftools_stats.txt
Bcftools	stats	HCC1395_BL.deconflicted_germline	/tmp/nxf.uMOsqH3Syc/48/HCC1395_BL.deconflicted_germline.bcftools_stats.txt
Bcftools	stats	HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv	/tmp/nxf.uMOsqH3Syc/37/HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv.bcftools_stats.txt
Bcftools	stats	HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv	/tmp/nxf.uMOsqH3Syc/38/HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv.bcftools_stats.txt
Bcftools	stats	HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels	/tmp/nxf.uMOsqH3Syc/43/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels.bcftools_stats.txt
Bcftools	stats	HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs	/tmp/nxf.uMOsqH3Syc/44/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs.bcftools_stats.txt
Bcftools	stats	Sig_18_Blood	/tmp/nxf.uMOsqH3Syc/39/Sig_18_Blood.bcftools_stats.txt
Bcftools	stats	Sig_18_Blood.deconflicted_germline	/tmp/nxf.uMOsqH3Syc/47/Sig_18_Blood.deconflicted_germline.bcftools_stats.txt
Bcftools	stats	custom_Sig_18_tumor_normal.manta.diploid_sv	/tmp/nxf.uMOsqH3Syc/41/custom_Sig_18_tumor_normal.manta.diploid_sv.bcftools_stats.txt
Bcftools	stats	custom_Sig_18_tumor_normal.manta.somatic_sv	/tmp/nxf.uMOsqH3Syc/42/custom_Sig_18_tumor_normal.manta.somatic_sv.bcftools_stats.txt
Bcftools	stats	custom_Sig_18_tumor_normal.strelka.somatic_indels	/tmp/nxf.uMOsqH3Syc/45/custom_Sig_18_tumor_normal.strelka.somatic_indels.bcftools_stats.txt
Bcftools	stats	custom_Sig_18_tumor_normal.strelka.somatic_snvs	/tmp/nxf.uMOsqH3Syc/46/custom_Sig_18_tumor_normal.strelka.somatic_snvs.bcftools_stats.txt
Vcftools	all_sections	TsTv by counts	/tmp/nxf.uMOsqH3Syc/57/custom_Sig_18_tumor_normal.strelka.somatic_snvs.TsTv.count
Vcftools	all_sections	TsTv by quality	/tmp/nxf.uMOsqH3Syc/69/custom_Sig_18_tumor_normal.strelka.somatic_snvs.TsTv.qual
SNPeff	all_sections	HCC1395_BL.deconflicted_germline_custom.ann_snpEff	/tmp/nxf.uMOsqH3Syc/88/HCC1395_BL.deconflicted_germline_custom.ann_snpEff.csv
SNPeff	all_sections	HCC1395_BL_custom.ann_snpEff	/tmp/nxf.uMOsqH3Syc/19/HCC1395_BL_custom.ann_snpEff.csv
SNPeff	all_sections	HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv_custom.ann_snpEff	/tmp/nxf.uMOsqH3Syc/17/HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv_custom.ann_snpEff.csv
SNPeff	all_sections	HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv_custom.ann_snpEff	/tmp/nxf.uMOsqH3Syc/18/HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv_custom.ann_snpEff.csv
SNPeff	all_sections	HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels_custom.ann_snpEff	/tmp/nxf.uMOsqH3Syc/25/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels_custom.ann_snpEff.csv
SNPeff	all_sections	HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs_custom.ann_snpEff	/tmp/nxf.uMOsqH3Syc/27/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs_custom.ann_snpEff.csv
SNPeff	all_sections	Sig_18_Blood.deconflicted_germline_custom.ann_snpEff	/tmp/nxf.uMOsqH3Syc/87/Sig_18_Blood.deconflicted_germline_custom.ann_snpEff.csv
SNPeff	all_sections	Sig_18_Blood_custom.ann_snpEff	/tmp/nxf.uMOsqH3Syc/21/Sig_18_Blood_custom.ann_snpEff.csv
SNPeff	all_sections	custom_Sig_18_tumor_normal.manta.diploid_sv_custom.ann_snpEff	/tmp/nxf.uMOsqH3Syc/20/custom_Sig_18_tumor_normal.manta.diploid_sv_custom.ann_snpEff.csv
SNPeff	all_sections	custom_Sig_18_tumor_normal.manta.somatic_sv_custom.ann_snpEff	/tmp/nxf.uMOsqH3Syc/22/custom_Sig_18_tumor_normal.manta.somatic_sv_custom.ann_snpEff.csv
SNPeff	all_sections	custom_Sig_18_tumor_normal.strelka.somatic_indels_custom.ann_snpEff	/tmp/nxf.uMOsqH3Syc/34/custom_Sig_18_tumor_normal.strelka.somatic_indels_custom.ann_snpEff.csv
SNPeff	all_sections	custom_Sig_18_tumor_normal.strelka.somatic_snvs_custom.ann_snpEff	/tmp/nxf.uMOsqH3Syc/33/custom_Sig_18_tumor_normal.strelka.somatic_snvs_custom.ann_snpEff.csv
VEP	all_sections	HCC1395_BL.deconflicted_germline_custom.ann_snpEff_VEP.ann	/tmp/nxf.uMOsqH3Syc/90/HCC1395_BL.deconflicted_germline_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	HCC1395_BL_custom.ann_snpEff_VEP.ann	/tmp/nxf.uMOsqH3Syc/28/HCC1395_BL_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv_custom.ann_snpEff_VEP.ann	/tmp/nxf.uMOsqH3Syc/23/HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv_custom.ann_snpEff_VEP.ann	/tmp/nxf.uMOsqH3Syc/24/HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels_custom.ann_snpEff_VEP.ann	/tmp/nxf.uMOsqH3Syc/32/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs_custom.ann_snpEff_VEP.ann	/tmp/nxf.uMOsqH3Syc/31/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	Sig_18_Blood.deconflicted_germline_custom.ann_snpEff_VEP.ann	/tmp/nxf.uMOsqH3Syc/89/Sig_18_Blood.deconflicted_germline_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	Sig_18_Blood_custom.ann_snpEff_VEP.ann	/tmp/nxf.uMOsqH3Syc/30/Sig_18_Blood_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	custom_Sig_18_tumor_normal.manta.diploid_sv_custom.ann_snpEff_VEP.ann	/tmp/nxf.uMOsqH3Syc/29/custom_Sig_18_tumor_normal.manta.diploid_sv_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	custom_Sig_18_tumor_normal.manta.somatic_sv_custom.ann_snpEff_VEP.ann	/tmp/nxf.uMOsqH3Syc/26/custom_Sig_18_tumor_normal.manta.somatic_sv_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	custom_Sig_18_tumor_normal.strelka.somatic_indels_custom.ann_snpEff_VEP.ann	/tmp/nxf.uMOsqH3Syc/36/custom_Sig_18_tumor_normal.strelka.somatic_indels_custom.ann_snpEff_VEP.ann.summary.html
VEP	all_sections	custom_Sig_18_tumor_normal.strelka.somatic_snvs_custom.ann_snpEff_VEP.ann	/tmp/nxf.uMOsqH3Syc/35/custom_Sig_18_tumor_normal.strelka.somatic_snvs_custom.ann_snpEff_VEP.ann.summary.html