.command.err - Workdir - NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (Sig_18_Blood)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/4d44ad592c3a576e3435898558e942/.command.err
Size: 501 bytes
Task: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (Sig_18_Blood)
Attempt

Content

[INFO] Loading resources...
[INFO] Cohort blacklist: 68611 positions
[INFO] Gene-family blacklist: 76473 positions
[INFO] ENCODE blacklist: 636 intervals
[INFO] Gene tiers: 19423 genes, max_tier=2
[INFO] Pre-filter: 0 PASS, 321 FAIL, 321 total
[INFO] Survivors BED: 0 sites written to Sig_18_Blood.survivors.bed
[INFO]   no_functional_impact: 242
[INFO]   hard_filter_reject: 50
[INFO]   cohort_blacklist: 19
[INFO]   gene_not_in_universe: 8
[INFO]   pon_artifact: 1
[INFO]   gene_family_blacklist: 1