succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:WHATSHAP_TNSEQ (custom_Sig_18_tumor_normal:chr21) 2m 9s 9s 1m 51s 9s 314.2 MB 100% 776.2 MB 492.8 KB 0 bytes 500.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:WHATSHAP_TNSEQ (HCC1395_tumor_vs_HCC1395_BL:chr21) 1m 0s 10s 41s 9s 159.5 MB 100% 415.0 MB 413.4 KB 0 bytes 420.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_CONTAMINATION (HCC1395_tumor_vs_HCC1395_BL) 7s 1s 4s 1s 85.8 MB 698% 27.0 MB 710 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_CONTAMINATION (Sig_18_tissue_vs_Sig_18_Blood) 16s 1s 13s 1s 86.8 MB 284% 29.5 MB 711 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_BL) 1m 32s 1m 18s 4s 9s 549.2 MB 206% 147.5 MB 1.3 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_tumor) 1m 32s 1m 18s 5s 8s 379.3 MB 184% 183.0 MB 2.2 MB 0 bytes 2.2 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_Blood) 1m 32s 1m 18s 4s 9s 637.8 MB 217% 157.5 MB 1.5 MB 0 bytes 1.6 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_tissue) 1m 33s 1m 18s 6s 8s 620.2 MB 168% 260.0 MB 4.5 MB 28.8 MB 4.6 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (HCC1395_BL;SNP_GRCh38_hg38_wChr) 1m 17s 58s 10s 9s 497.4 MB 331% 4.1 GB 832.8 KB 0 bytes 212.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (HCC1395_tumor;SNP_GRCh38_hg38_wChr) 1m 9s 47s 13s 9s 499.0 MB 288% 4.5 GB 847.2 KB 0 bytes 216.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (Sig_18_Blood;SNP_GRCh38_hg38_wChr) 1m 8s 48s 11s 9s 418.1 MB 294% 3.9 GB 830.3 KB 0 bytes 208.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (Sig_18_tissue;SNP_GRCh38_hg38_wChr) 1m 12s 48s 15s 9s 499.4 MB 261% 4.8 GB 851.1 KB 64.8 MB 216.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:NGSCHECKMATE_NCM (1) 21s 11s - - 3.3 MB 3112% 12.1 MB 859.2 KB 0 bytes 900.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_BL) 1m 30s 56s 25s 9s 1.9 GB 106% 167.1 MB 6.1 MB 151.7 MB 6.2 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_tumor) 1m 22s 47s 26s 9s 1.9 GB 113% 333.6 MB 9.7 MB 316.6 MB 9.7 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (Sig_18_Blood) 1m 20s 46s 25s 9s 1.9 GB 108% 213.5 MB 7.4 MB 198.4 MB 7.4 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (Sig_18_tissue) 1m 25s 47s 28s 10s 1.9 GB 125% 720.9 MB 14.8 MB 694.5 MB 14.9 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_BL) 57s 45s 3s 9s 8.9 MB 133% 155.6 MB 125.7 KB 0 bytes 128.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_tumor) 1m 2s 45s 8s 9s 9.0 MB 128% 318.0 MB 131.5 KB 0 bytes 132.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_Blood) 57s 44s 4s 9s 8.9 MB 131% 199.3 MB 128.0 KB 0 bytes 128.0 KB 1
306 items found |
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