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custom_Sig_18_tumor_normal.strelka.somatic_snvs_custom.ann_snpEff.genes.txt
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s3://natera-rnd-pltf-dev-s3-gitlab-results/sarek/build2800220/baseline-run/63640739/reports/raw_qc/snpeff/strelka/custom_Sig_18_tumor_normal/custom_Sig_18_tumor_normal.strelka.somatic_snvs_custom.ann_snpEff.genes.txt
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Jun 05, 2026 8:29 AM
# The following table is formatted as tab separated values. 
#GeneName	GeneId	TranscriptId	BioType	variants_impact_HIGH	variants_impact_LOW	variants_impact_MODERATE	variants_impact_MODIFIER	variants_effect_3_prime_UTR_variant	variants_effect_5_prime_UTR_premature_start_codon_gain_variant	variants_effect_5_prime_UTR_variant	variants_effect_downstream_gene_variant	variants_effect_intron_variant	variants_effect_missense_variant	variants_effect_non_coding_transcript_exon_variant	variants_effect_splice_region_variant	variants_effect_stop_gained	variants_effect_synonymous_variant	variants_effect_upstream_gene_variant
ADARB1	ENSG00000197381	ENST00000360697	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0
AIRE	ENSG00000160224	ENST00000291582	protein_coding	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0
APP	ENSG00000142192	ENST00000346798	protein_coding	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0
ATP5PF	ENSG00000154723	ENST00000400099	protein_coding	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
BACE2	ENSG00000182240	ENST00000330333	protein_coding	0	0	0	3	0	0	0	0	3	0	0	0	0	0	0
BACE2-IT1	ENSG00000224388	ENST00000433378		0	0	0	3	0	0	0	0	0	0	0	0	0	0	3
BRWD1	ENSG00000185658	ENST00000333229	protein_coding	0	0	0	7	0	0	0	3	4	0	0	0	0	0	0
BRWD1-AS1	ENSG00000238141	ENST00000423274		0	0	0	2	0	0	0	0	0	0	0	0	0	0	2
BRWD1-AS2	ENSG00000255568	ENST00000603064		0	0	0	2	0	0	0	0	0	0	0	0	0	0	2
BRWD1-IT1	ENSG00000237373	ENST00000435608		0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
C21orf58	ENSG00000160298	ENST00000291691	protein_coding	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
C2CD2	ENSG00000157617	ENST00000380486	protein_coding	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
CBR1	ENSG00000159228	ENST00000290349	protein_coding	0	0	1	4	0	0	0	0	4	1	0	0	0	0	0
CBR3	ENSG00000159231	ENST00000290354	protein_coding	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0
CBR3-AS1	ENSG00000236830	ENST00000432988	retained_intron	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0
CBSL	ENSG00000274276	ENST00000624934	protein_coding	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
CFAP298	ENSG00000159079	ENST00000290155	protein_coding	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0
CFAP298-TCP10L	ENSG00000265590	ENST00000673807	protein_coding	0	1	0	1	0	0	0	0	1	0	0	0	0	1	0
CFAP410	ENSG00000160226	ENST00000397956	protein_coding	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0
CHAF1B	ENSG00000159259	ENST00000314103	protein_coding	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0
CHODL	ENSG00000154645	ENST00000299295	protein_coding	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
CLDN14	ENSG00000159261	ENST00000342108	protein_coding	0	1	0	1	0	1	1	0	0	0	0	0	0	0	0
CLIC6	ENSG00000159212	ENST00000360731	protein_coding	0	2	4	2	0	0	0	0	2	4	0	0	0	2	0
COL18A1	ENSG00000182871	ENST00000359759	protein_coding	0	0	0	4	0	0	0	1	2	0	0	0	0	0	1
COL6A1	ENSG00000142156	ENST00000361866	protein_coding	0	0	0	4	0	0	0	0	4	0	0	0	0	0	0
COL6A2	ENSG00000142173	ENST00000300527	protein_coding	0	1	1	0	0	0	0	0	0	1	0	0	0	1	0
CSTB	ENSG00000160213	ENST00000291568	protein_coding	0	0	0	2	1	0	0	0	1	0	0	0	0	0	0
CYYR1	ENSG00000166265	ENST00000652641	protein_coding	0	0	0	3	0	0	1	0	1	0	0	0	0	0	1
CYYR1-AS1	ENSG00000197934	ENST00000357401		0	0	0	3	0	0	0	2	1	0	0	0	0	0	0
DNMT3L	ENSG00000142182	ENST00000270172	protein_coding	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
DONSON	ENSG00000159147	ENST00000303071	protein_coding	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0
DOP1B	ENSG00000142197	ENST00000399151	protein_coding	0	0	0	4	0	0	0	0	4	0	0	0	0	0	0
DSCAM	ENSG00000171587	ENST00000400454	protein_coding	0	0	2	3	0	0	0	0	3	2	0	0	0	0	0
DYRK1A	ENSG00000157540	ENST00000398960	protein_coding	0	1	0	1	0	0	0	0	2	0	0	1	0	0	0
ENSG00000184441	ENSG00000184441	ENST00000448927		0	0	0	2	0	0	0	2	0	0	0	0	0	0	0
ENSG00000224790	ENSG00000224790	ENST00000653177		0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
ENSG00000227757	ENSG00000227757	ENST00000454622		0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
ENSG00000228137	ENSG00000228137	ENST00000444966		0	0	0	3	0	0	0	0	0	0	0	0	0	0	3
ENSG00000228318	ENSG00000228318	ENST00000411427		0	0	0	2	0	0	0	1	0	0	1	0	0	0	0
ENSG00000229047	ENSG00000229047	ENST00000446301		0	0	0	1	0	0	0	1	0	0	0	0	0	0	0
ENSG00000230212	ENSG00000230212	ENST00000535199		0	0	0	5	0	0	0	0	5	0	0	0	0	0	0
ENSG00000230479	ENSG00000230479	ENST00000429588		0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
ENSG00000231201	ENSG00000231201	ENST00000436429		0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
ENSG00000232969	ENSG00000232969	ENST00000426029		0	0	0	2	0	0	0	0	0	0	0	0	0	0	2
ENSG00000233818	ENSG00000233818	ENST00000428667		0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
ENSG00000235609	ENSG00000235609	ENST00000432230		0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
ENSG00000249209	ENSG00000249209	ENST00000429238	protein_coding	0	0	0	4	0	0	0	1	3	0	0	0	0	0	0
ENSG00000249624	ENSG00000249624	ENST00000433395	protein_coding	0	0	0	3	0	0	0	0	3	0	0	0	0	0	0
ENSG00000260583	ENSG00000260583	ENST00000567517		0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
ENSG00000272991	ENSG00000272991	ENST00000608767		0	0	0	3	0	0	0	0	0	0	0	0	0	0	3
ENSG00000273840	ENSG00000273840	ENST00000612267		0	0	0	5	0	0	0	0	5	0	0	0	0	0	0
ENSG00000286224	ENSG00000286224	ENST00000652508	protein_coding	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
ENSG00000287507	ENSG00000287507	ENST00000660472		0	0	0	2	0	0	0	2	0	0	0	0	0	0	0
ENSG00000289001	ENSG00000289001	ENST00000692721		0	0	0	5	0	0	0	5	0	0	0	0	0	0	0
ENSG00000289404	ENSG00000289404	ENST00000692770		0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
ERG	ENSG00000157554	ENST00000398919	protein_coding	0	0	0	3	0	0	0	0	3	0	0	0	0	0	0
ETS2	ENSG00000157557	ENST00000667466	protein_coding	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
FTCD	ENSG00000160282	ENST00000397748	protein_coding	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
GABPA	ENSG00000154727	ENST00000354828	protein_coding	0	0	0	3	0	0	1	0	2	0	0	0	0	0	0
GART	ENSG00000159131	ENST00000381815	protein_coding	0	1	0	3	0	0	0	0	2	0	0	1	0	0	2
GET1-SH3BGR	ENSG00000285815	ENST00000647779	protein_coding	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
GRIK1	ENSG00000171189	ENST00000327783	protein_coding	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0
HLCS	ENSG00000159267	ENST00000674895	protein_coding	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0
HSPA13	ENSG00000155304	ENST00000285667	protein_coding	0	1	1	1	0	0	0	0	1	1	0	0	0	1	0
HUNK	ENSG00000142149	ENST00000270112	protein_coding	0	1	1	0	0	0	0	0	1	1	0	1	0	0	0
ICOSLG	ENSG00000160223	ENST00000400379	protein_coding	0	0	1	1	0	0	0	1	0	1	0	0	0	0	0
IFNAR2	ENSG00000159110	ENST00000342136	protein_coding	0	0	0	3	1	0	0	0	2	0	0	0	0	0	0
IL10RB	ENSG00000243646	ENST00000290200	protein_coding	0	0	0	4	0	0	0	0	1	0	0	0	0	0	3
IL10RB-DT	ENSG00000223799	ENST00000411998		0	0	0	3	0	0	0	3	0	0	0	0	0	0	0
ITGB2	ENSG00000160255	ENST00000302347	protein_coding	0	0	0	2	1	0	0	0	1	0	0	0	0	0	0
ITSN1	ENSG00000205726	ENST00000381318	protein_coding	1	0	0	2	0	0	0	0	2	0	0	0	1	0	0
KRTAP10-1	ENSG00000215455	ENST00000400375	protein_coding	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0
KRTAP10-10	ENSG00000221859	ENST00000380095	protein_coding	0	1	3	0	0	0	0	0	0	3	0	0	0	1	0
KRTAP10-11	ENSG00000243489	ENST00000334670	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0
KRTAP10-2	ENSG00000205445	ENST00000391621	protein_coding	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0
KRTAP10-4	ENSG00000215454	ENST00000400374	protein_coding	0	1	2	0	0	0	0	0	0	2	0	0	0	1	0
KRTAP10-5	ENSG00000241123	ENST00000400372	protein_coding	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0
KRTAP10-6	ENSG00000188155	ENST00000400368	protein_coding	0	4	4	0	0	0	0	0	0	4	0	0	0	4	0
KRTAP10-7	ENSG00000272804	ENST00000609664	protein_coding	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0
KRTAP12-2	ENSG00000221864	ENST00000360770	protein_coding	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0
LCA5L	ENSG00000157578	ENST00000288350	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0
LLPHP2	ENSG00000235514	ENST00000436405	processed_pseudogene	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
LSS	ENSG00000160285	ENST00000356396	protein_coding	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
LTN1	ENSG00000198862	ENST00000614971	protein_coding	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0
MCM3AP	ENSG00000160294	ENST00000291688	protein_coding	0	1	2	5	0	0	0	0	5	2	0	1	0	1	0
MCM3AP-AS1	ENSG00000215424	ENST00000664725		0	0	0	6	0	0	0	0	5	0	1	0	0	0	0
MIR6501	ENSG00000284448	ENST00000290239	miRNA	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0
MIR6815	ENSG00000275167	ENST00000611994	miRNA	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
MIS18A	ENSG00000159055	ENST00000290130	protein_coding	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0
MORC3	ENSG00000159256	ENST00000400485	protein_coding	0	2	0	2	0	0	0	0	4	0	0	2	0	0	0
MRAP	ENSG00000170262	ENST00000303645	protein_coding	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
MRPL39	ENSG00000154719	ENST00000307301	protein_coding	0	2	1	1	0	0	0	0	1	1	0	1	0	2	0
MX1	ENSG00000157601	ENST00000398598	protein_coding	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0
MX2	ENSG00000183486	ENST00000330714	protein_coding	0	0	1	2	0	0	0	0	2	1	0	0	0	0	0
NCAM2	ENSG00000154654	ENST00000400546	protein_coding	0	0	1	1	0	0	0	0	1	1	0	1	0	0	0
NDUFV3	ENSG00000160194	ENST00000354250	protein_coding	0	0	1	3	2	0	0	0	1	1	0	0	0	0	0
NRIP1	ENSG00000180530	ENST00000318948	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0
OLIG1	ENSG00000184221	ENST00000382348	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0
PCNT	ENSG00000160299	ENST00000359568	protein_coding	0	2	2	2	0	0	0	0	2	2	0	0	0	2	0
PDE9A	ENSG00000160191	ENST00000291539	protein_coding	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
PDXK	ENSG00000160209	ENST00000291565	protein_coding	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0
PFKL	ENSG00000141959	ENST00000349048	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0
PKNOX1	ENSG00000160199	ENST00000291547	protein_coding	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
PLAC4	ENSG00000280109	ENST00000645185		0	0	0	3	0	0	0	0	0	0	3	0	0	0	0
PRDM15	ENSG00000141956	ENST00000269844	protein_coding	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
PRMT2	ENSG00000160310	ENST00000355680	protein_coding	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
PSMG1	ENSG00000183527	ENST00000331573	protein_coding	0	2	1	1	0	0	0	0	3	1	0	2	0	0	0
RIPPLY3	ENSG00000183145	ENST00000329553	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0
RNU6-992P	ENSG00000200213	ENST00000363343	snRNA	0	0	0	4	0	0	0	4	0	0	0	0	0	0	0
RPL3P1	ENSG00000228149	ENST00000437106	processed_pseudogene	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0
RRP1	ENSG00000160214	ENST00000497547	protein_coding	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0
RRP1B	ENSG00000160208	ENST00000340648	protein_coding	0	0	2	1	0	0	0	0	1	2	0	0	0	0	0
RSPH1	ENSG00000160188	ENST00000291536	protein_coding	0	1	0	2	0	0	0	0	3	0	0	1	0	0	0
RUNX1	ENSG00000159216	ENST00000300305	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0
SCAF4	ENSG00000156304	ENST00000286835	protein_coding	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
SLC19A1	ENSG00000173638	ENST00000311124	protein_coding	0	0	0	2	1	0	0	0	1	0	0	0	0	0	0
SLC37A1	ENSG00000160190	ENST00000352133	protein_coding	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0
SLX9	ENSG00000160256	ENST00000291634	protein_coding	0	0	0	4	0	0	0	0	4	0	0	0	0	0	0
SNORA80A	ENSG00000200792	ENST00000363922	snoRNA	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0
SNRPGP13	ENSG00000231480	ENST00000442212	processed_pseudogene	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
SON	ENSG00000159140	ENST00000356577	protein_coding	0	0	2	3	0	0	0	1	0	2	0	0	0	0	2
SYNJ1	ENSG00000159082	ENST00000433931	protein_coding	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
TCP10L	ENSG00000242220	ENST00000300258	protein_coding	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0
TIAM1	ENSG00000156299	ENST00000286827	protein_coding	0	0	0	3	0	0	0	0	3	0	0	0	0	0	0
TMPRSS15	ENSG00000154646	ENST00000284885	protein_coding	0	0	0	4	0	0	0	0	4	0	0	0	0	0	0
TMPRSS2	ENSG00000184012	ENST00000679263	protein_coding	0	1	1	10	0	0	0	0	10	1	0	0	0	1	0
TMPRSS3	ENSG00000160183	ENST00000433957	protein_coding	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
TPTE	ENSG00000274391	ENST00000618007	protein_coding	0	0	0	5	0	0	0	0	5	0	0	0	0	0	0
TRPM2	ENSG00000142185	ENST00000397932	protein_coding	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
TSPEAR	ENSG00000175894	ENST00000323084	protein_coding	0	0	0	23	0	0	0	0	23	0	0	0	0	0	0
TTC3	ENSG00000182670	ENST00000354749	protein_coding	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0
TTC3-AS1	ENSG00000228677	ENST00000424733		0	0	0	1	0	0	0	1	0	0	0	0	0	0	0
UBE2G2	ENSG00000184787	ENST00000345496	protein_coding	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0
UMODL1	ENSG00000177398	ENST00000408989	protein_coding	0	1	3	2	1	0	0	0	2	3	0	1	0	0	0
UMODL1-AS1	ENSG00000184385	ENST00000329015		0	0	0	3	0	0	0	0	0	0	0	0	0	0	3
URB1	ENSG00000142207	ENST00000382751	protein_coding	0	1	0	2	0	0	0	0	2	0	0	0	0	1	0
USP16	ENSG00000156256	ENST00000334352	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0
USP25	ENSG00000155313	ENST00000400183	protein_coding	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0
WDR4	ENSG00000160193	ENST00000330317	protein_coding	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
YBEY	ENSG00000182362	ENST00000329319	protein_coding	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1