File Info
- Filename
- variant_qc.csv
- Full Path
- s3://natera-rnd-pltf-dev-s3-gitlab-results/sarek/build2800220/baseline-run/63640739/reports/variant_qc.csv
- Size
- 1.4 KB
- Workflow Run
- gitlab-sarek-build2800220-baseline-run-63640739
- Published
- Jun 05, 2026 8:44 AM
Content
View in new tab| pair_id | tumor_sample | normal_sample | contamination_normal_contamination_pct | contamination_tumor_contamination_pct | identity_matched | identity_tumor_normal_correlation | normal_deconflict_chip_germ_chip_wins | normal_deconflict_chip_germ_germ_wins | normal_deconflict_chip_germ_suppress_both | normal_deconflict_chip_somatic_suspect | normal_deconflict_germ_som_germ_wins | normal_deconflict_germ_som_suppress_both | normal_deconflict_total_chip_germ_conflicts | normal_deconflict_total_germ_som_conflicts | normal_germline_cnv_cnv_call_status | normal_germline_cnv_list_of_abnormal_ploidy_chr | normal_germline_cnv_low_coverage_sample_or_batch | normal_germline_cnv_num_del | normal_germline_cnv_num_del_abnormal_ploidy_chr | normal_germline_cnv_num_dup | normal_germline_cnv_num_dup_abnormal_ploidy_chr | normal_germline_cnv_num_lowconf_del | normal_germline_cnv_num_lowconf_del_abnormal_ploidy_chr | normal_germline_cnv_num_lowconf_dup | normal_germline_cnv_num_lowconf_dup_abnormal_ploidy_chr | strelka_num_indels | strelka_num_snps | tmb_effective_coding_region_size | tmb_filtered_variant_count | tmb_non_synonymous_count |
| Sig_18_tissue_vs_Sig_18_Blood | 0.0 | 0.007 | ||||||||||||||||||||||||||||
| HCC1395_tumor_vs_HCC1395_BL | HCC1395_tumor | HCC1395_BL | 0.0 | 0.254 | True | 0.9585 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | PASS | False | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 42 | 300 | 0.34 | 3.0 | 1.0 | |
| custom_Sig_18_tumor_normal | Sig_18_tissue | Sig_18_Blood | True | 0.9422 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | PASS | False | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 88 | 237 | 0.34 | 5.0 | 2.0 |
4 rows