.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:CONCAT_WHATSHAP_TNSEQ_VCFS (HCC1395_tumor_vs_HCC1395_BL)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/9ebf21b5e9131629ed181b505d3d7d/.command.log
Size: 565 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:CONCAT_WHATSHAP_TNSEQ_VCFS (HCC1395_tumor_vs_HCC1395_BL)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/9ebf21b5e9131629ed181b505d3d7d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/af6d217a7edf23f912d35b4d1d44fa/HCC1395_tumor_vs_HCC1395_BL.tnseq.whatshap.chr21.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/9ebf21b5e9131629ed181b505d3d7d/.command.run
==> STAGING COMPLETE (3 inputs)

Checking the headers and starting positions of 1 files
ls: HCC1395_tumor_vs_HCC1395_BL.tnseq.whatshap.phased.vcf.gz.csi: No such file or directory