Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/HCC1395_tumor/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/e30967033cbc978f448ba3954faa14/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/HCC1395_tumor/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/HCC1395_BL/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/HCC1395_BL/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/0ea5238c9a4a3c0d7fe7c311e9f96d/HCC1395_tumor_vs_HCC1395_BL.manta.candidate_small_indels.vcf.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/regression_padded_intervals/scatter/chr21_34799195-34799564.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/0ea5238c9a4a3c0d7fe7c311e9f96d/HCC1395_tumor_vs_HCC1395_BL.manta.candidate_small_indels.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/e30967033cbc978f448ba3954faa14/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/regression_padded_intervals/scatter/chr21_34799195-34799564.bed.gz
==> STAGING COMPLETE (12 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXe6iCV0/chr21_34799195-34799564.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXe6iCV0/chr21_34799195-34799564.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXe6iCV0/chr21_34799195-34799564.bed.gz.tbi
[2026-06-05T15:20:41.338948Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T15:20:41.339905Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T15:20:41.339917Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T15:20:41.339921Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T15:20:41.339925Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXe6iCV0'
[2026-06-05T15:20:41.339929Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T15:20:41.339938Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T15:20:41.339943Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T15:20:41.339947Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-05T15:20:41.339952Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T15:20:41.339957Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T15:20:41.339961Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T15:20:41.339964Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T15:20:41.339971Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T15:20:41.340780Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T15:20:41.340910Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T15:20:41.346592Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T15:20:41.347210Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T15:20:41.347435Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T15:20:41.347594Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T15:20:41.347957Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T15:20:41.348515Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T15:20:41.349878Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-05T15:20:41.350068Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-05T15:20:41.350303Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-05T15:20:41.350658Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-05T15:20:41.352252Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-05T15:20:41.352589Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T15:20:41.353123Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-05T15:20:41.353233Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-05T15:20:41.367529Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-05T15:20:41.367697Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-05T15:20:41.368002Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T15:20:41.368097Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T15:20:41.368170Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T15:20:41.368244Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T15:20:41.368310Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T15:20:41.368401Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T15:20:41.368475Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T15:20:41.368520Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T15:20:41.384538Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T15:20:41.384795Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-05T15:20:41.385261Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-05T15:20:41.385570Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-05T15:20:41.385851Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-05T15:20:41.391317Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-05T15:20:41.393511Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-05T15:20:41.394053Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-05T15:20:41.500436Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T15:20:41.500755Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-05T15:20:41.503306Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-05T15:20:41.532846Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T15:20:42.749322Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T15:20:42.749657Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-05T15:20:42.752586Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-05T15:20:42.781510Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.494266Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-05T15:21:11.505285Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.505362Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.506029Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.506380Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.509330Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_020_chr21_0000] Task initiated on local node
[2026-06-05T15:21:11.509828Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-05T15:21:11.571433Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.571492Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.571715Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.575148Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-05T15:21:11.636219Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.636404Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.636546Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.637084Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.637778Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.641793Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T15:21:11.643928Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T15:21:11.644814Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T15:21:11.704649Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.704720Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.704749Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.704972Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.705493Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.708897Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T15:21:11.709965Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T15:21:11.739187Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.739272Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.739492Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T15:21:11.742224Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T15:21:11.771642Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T15:21:14.491750Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T15:21:29.459161Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T15:21:29.459161Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] 
[2026-06-05T15:21:29.459161Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T15:21:29.459249Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] 
[2026-06-05T15:21:29.459257Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T15:21:29.459265Z] [nf-dae30967033cbc978f448ba3954faa14-df5d5-blph4] [699_1] [WorkflowRunner] Elapsed time for full workflow: 48 sec