.command.err - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:VCF_SOMATIC_SNV_INDEL:HARD_FILTER_VCF (HCC1395_tumor_vs_HCC1395_BL)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/22c83fc11fb9c5070dd2683652b836/.command.err
Size: 365 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:VCF_SOMATIC_SNV_INDEL:HARD_FILTER_VCF (HCC1395_tumor_vs_HCC1395_BL)
Attempt

Content

Loading PON positions from pon_tnseq_42_curated_v4.vcf.gz
  Loaded 550,680 PON positions
Loading POT positions from aih_tumor_1577_pot_1pct_artifacts_only.vcf.gz
  Loaded 545 POT positions
Hard filter summary: 187 variants processed, 6 PASS
  low_tumor_dp: 2
  low_normal_dp: 2
  low_tumor_alt: 21
  high_normal_vaf: 154
  panel_of_normals: 38
  panel_of_tumors: 1