.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:FILTER_TNSEQ_VCF_FOR_SOMATIC (custom_Sig_18_tumor_normal)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/eb7591d3309a987c0a2d94ca5a7bb3/.command.log
Size: 707 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:FILTER_TNSEQ_VCF_FOR_SOMATIC (custom_Sig_18_tumor_normal)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/6b0c44616a5447e5ddb355a63f75c7/custom_Sig_18_tumor_normal.tnseq.filtered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/eb7591d3309a987c0a2d94ca5a7bb3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/eb7591d3309a987c0a2d94ca5a7bb3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/6b0c44616a5447e5ddb355a63f75c7/custom_Sig_18_tumor_normal.tnseq.filtered.vcf.gz
==> STAGING COMPLETE (4 inputs)

ls: *.vcf: No such file or directory
ls: *.bcf: No such file or directory
ls: *.bcf.gz: No such file or directory
ls: *.csi: No such file or directory