cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval germline_rescue_targets.bed -i Sig_18_Blood.recalibrated.bam --algo Haplotyper --given Sig_18_Blood.dv_only_sites.vcf.gz --emit_mode variant Sig_18_Blood.forcecall.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:29504409, elapsed 0.0s, est remaining 0.1s, peak mem 48MB, user 0.0s, sys 0.0s, output queue size 8
progress 10% @chr2:214725647, elapsed 0.0s, est remaining 0.1s, peak mem 48MB, user 0.0s, sys 0.0s, output queue size 120
progress 15% @chr3:142535080, elapsed 0.0s, est remaining 0.1s, peak mem 48MB, user 0.0s, sys 0.0s, output queue size 340
progress 20% @chr5:112827091, elapsed 0.0s, est remaining 0.1s, peak mem 48MB, user 0.0s, sys 0.0s, output queue size 523
progress 25% @chr7:5999106, elapsed 0.0s, est remaining 0.1s, peak mem 48MB, user 0.0s, sys 0.0s, output queue size 656
progress 30% @chr7:55176897, elapsed 0.0s, est remaining 0.0s, peak mem 48MB, user 0.0s, sys 0.0s, output queue size 700
progress 35% @chr9:21970761, elapsed 0.0s, est remaining 0.0s, peak mem 48MB, user 0.0s, sys 0.0s, output queue size 833
progress 40% @chr10:43111197, elapsed 0.0s, est remaining 0.0s, peak mem 48MB, user 0.0s, sys 0.0s, output queue size 979
progress 45% @chr11:61444108, elapsed 0.0s, est remaining 0.0s, peak mem 48MB, user 0.0s, sys 0.0s, output queue size 1096
progress 50% @chr12:11770919, elapsed 0.0s, est remaining 0.0s, peak mem 48MB, user 0.0s, sys 0.1s, output queue size 1278
progress 55% @chr12:11799959, elapsed 0.0s, est remaining 0.0s, peak mem 48MB, user 0.0s, sys 0.1s, output queue size 1290
progress 60% @chr12:11810159, elapsed 0.0s, est remaining 0.0s, peak mem 48MB, user 0.0s, sys 0.1s, output queue size 1126
progress 65% @chr12:132657862, elapsed 0.0s, est remaining 0.0s, peak mem 48MB, user 0.0s, sys 0.1s, output queue size 1187
progress 70% @chr14:65075125, elapsed 0.0s, est remaining 0.0s, peak mem 48MB, user 0.0s, sys 0.1s, output queue size 1368
progress 75% @chr15:89303863, elapsed 0.0s, est remaining 0.0s, peak mem 48MB, user 0.0s, sys 0.1s, output queue size 1518
progress 80% @chr17:7679679, elapsed 0.0s, est remaining 0.0s, peak mem 48MB, user 0.0s, sys 0.1s, output queue size 1751
progress 85% @chr17:39532155, elapsed 0.0s, est remaining 0.0s, peak mem 48MB, user 0.0s, sys 0.1s, output queue size 1934
progress 90% @chr17:61681285, elapsed 0.0s, est remaining 0.0s, peak mem 48MB, user 0.0s, sys 0.1s, output queue size 2036
progress 95% @chr19:52185532, elapsed 0.0s, est remaining 0.0s, peak mem 48MB, user 0.0s, sys 0.1s, output queue size 2221
progress 100% @chr21:34787802, elapsed 0.2s, est remaining 0.0s, peak mem 117MB, user 0.2s, sys 0.2s, output queue size 124
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 208827488
output file size: 22302
reads: 2481283
contig: 2712 intervals 851273 bases
active: 5761 calls 0.000 user 0.001 sys 0.002 real
advance: 3049 calls 0.137 user 0.076 sys 0.236 real
calc: 5761 calls 0.021 user 0.000 sys 0.046 real
clip_region: 7 calls 0.003 user 0.000 sys 0.004 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.001 user 0.002 sys 0.171 real
fetch: 5761 calls 0.014 user 0.010 sys 0.021 real
fetch_ref: 5768 calls 0.005 user 0.000 sys 0.022 real
fetch_region: 7 calls 0.000 user 0.000 sys 0.003 real
idle: 24 calls 0.013 user 0.004 sys 13.139 real
init: 1 calls 0.000 user 0.000 sys 0.002 real
region: 5761 calls 0.003 user 0.000 sys 0.009 real
tracker: 5761 calls 0.000 user 0.000 sys 0.006 real
overall: 125964288 mem 0.371 user 0.392 sys 1.226 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory