File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/ac6d9512d4af764498a345612eafa3/.command.err
Size
6.2 KB
Task
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_CALL (custom_Sig_18_tumor_normal)
Attempt

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mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-woxfwck_ because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)
/usr/local/lib/python3.12/site-packages/sklearn/base.py:1403: ConvergenceWarning: Number of distinct clusters (3) found smaller than n_clusters (12). Possibly due to duplicate points in X.
  return fit_method(estimator, *args, **kwargs)