File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/55c9c85c8c467ccff0238ef145f838/.command.log
Size
1.1 KB
Task
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DIFF_DV_SENTIEON (HCC1395_BL)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/c47b048f9c8320db383fa53f5f46a8/HCC1395_BL.dv_rescue.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/c47b048f9c8320db383fa53f5f46a8/HCC1395_BL.dv_rescue.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/55c9c85c8c467ccff0238ef145f838/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/55c9c85c8c467ccff0238ef145f838/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/88ba1a0c03ac5a494d81740d5d889c/HCC1395_BL.haplotyper.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/88ba1a0c03ac5a494d81740d5d889c/HCC1395_BL.haplotyper.unfiltered.vcf.gz.tbi
==> STAGING COMPLETE (6 inputs)

INFO: Loading Sentieon variant positions...
INFO:   353 variant positions in Sentieon VCF
INFO: Scanning DeepVariant VCF for novel INDEL positions...
INFO:   0 PASS INDELs in DeepVariant VCF
INFO:   0 novel positions (not in Sentieon) -> written to HCC1395_BL.dv_only_sites.vcf.gz