[W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recalibrated.bam.bai
Loaded 735874 sites across 3366 contigs
Loaded 735874 sites across 3366 contigs
Reads: 45689 total, 6170 skipped (flags/unmapped), 39519 no site overlap
Fragments: 0 total (0 paired, 0 singletons, 0 discordant, 0 orphans)
Sites: 735874 total, 0 with data, 0 output (depth>=10)
Reads: 12153017 total, 10381 skipped (flags/unmapped), 1413852 no site overlap
Fragments: 5495081 total (5233703 paired, 57 singletons, 0 discordant, 261321 orphans)
Sites: 735874 total, 275497 with data, 98384 output (depth>=10)