Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/2ad4802a75664c3e9077576d3f19da/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels_custom.ann_snpEff.ann.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/e055016a63de6422dd18981e30e603/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/e055016a63de6422dd18981e30e603/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/annotation-cache/vep_cache/113_GRCh38
==> STAGING COMPLETE (4 inputs)

2026-06-05 15:28:39 - INFO: Disabling --hgvs; using --offline and no FASTA file found
ls: *.tab.gz: No such file or directory
ls: *.json.gz: No such file or directory