cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --max_event_count 5 -v Sig_18_Blood.tnseq_tumor_only.vcf.gz --contamination Sig_18_Blood.tnseq_tumor_only.contamination_data.tsv --tumor_segments Sig_18_Blood.tnseq_tumor_only.segments --orientation_priors Sig_18_Blood.tnseq_tumor_only.orientation_data.tsv Sig_18_Blood.tnseq_tumor_only.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:60000001, elapsed 0.1s, est remaining 1.9s, peak mem 813MB, user 0.1s, sys 3.9s, output queue size 130
progress 10% @chr3:84000001, elapsed 0.2s, est remaining 1.7s, peak mem 813MB, user 0.3s, sys 12.7s, output queue size 280
progress 15% @chr4:80000001, elapsed 0.3s, est remaining 1.6s, peak mem 813MB, user 0.5s, sys 24.8s, output queue size 441
progress 20% @chr5:62000001, elapsed 0.3s, est remaining 1.4s, peak mem 813MB, user 0.7s, sys 38.6s, output queue size 603
progress 25% @chr5:167000001, elapsed 0.4s, est remaining 1.2s, peak mem 813MB, user 1.2s, sys 58.5s, output queue size 764
progress 30% @chr6:169000001, elapsed 0.5s, est remaining 1.1s, peak mem 813MB, user 1.5s, sys 77.7s, output queue size 926
progress 35% @chr5:145000001, elapsed 0.5s, est remaining 1.0s, peak mem 813MB, user 2.0s, sys 95.1s, output queue size 1087
progress 40% @chr8:69000001, elapsed 0.6s, est remaining 0.9s, peak mem 813MB, user 2.5s, sys 107.5s, output queue size 1056
progress 45% @chr7:9000001, elapsed 0.6s, est remaining 0.8s, peak mem 813MB, user 3.0s, sys 122.0s, output queue size 1218
progress 50% @chr10:104000001, elapsed 0.7s, est remaining 0.7s, peak mem 813MB, user 3.7s, sys 136.0s, output queue size 1380
progress 55% @chr8:56000001, elapsed 0.7s, est remaining 0.6s, peak mem 813MB, user 4.2s, sys 149.7s, output queue size 1541
progress 60% @chr8:29000001, elapsed 0.8s, est remaining 0.5s, peak mem 813MB, user 4.9s, sys 164.1s, output queue size 1704
progress 65% @chr15:1000001, elapsed 0.8s, est remaining 0.5s, peak mem 813MB, user 5.5s, sys 181.6s, output queue size 1865
progress 70% @chr16:57000001, elapsed 0.9s, est remaining 0.4s, peak mem 813MB, user 6.1s, sys 199.9s, output queue size 2026
progress 75% @chr18:62000001, elapsed 1.0s, est remaining 0.3s, peak mem 813MB, user 6.6s, sys 220.7s, output queue size 2188
progress 80% @chr17:70000001, elapsed 1.0s, est remaining 0.3s, peak mem 813MB, user 7.2s, sys 238.8s, output queue size 2351
progress 85% @chr19:10000001, elapsed 1.1s, est remaining 0.2s, peak mem 813MB, user 7.6s, sys 254.9s, output queue size 2513
progress 90% @chrX:154000001, elapsed 1.1s, est remaining 0.1s, peak mem 813MB, user 8.2s, sys 279.6s, output queue size 2798
progress 95% @chrX:129000001, elapsed 1.2s, est remaining 0.1s, peak mem 813MB, user 9.0s, sys 306.9s, output queue size 3262
progress 100% @HLA-C*07:02:06:1, elapsed 1.3s, est remaining 0.0s, peak mem 813MB, user 9.5s, sys 326.7s, output queue size 1419
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 57860
output file size: 46923
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 642 calls 0.002 user 0.000 sys 0.012 real
"predict_filter": 214 calls 0.035 user 0.023 sys 0.186 real
advance: 3219322 calls 0.356 user 115.710 sys 119.177 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.002 user 0.002 sys 1.475 real
fetch_ref: 624 calls 0.011 user 0.091 sys 0.546 real
idle: 20633 calls 0.646 user 0.333 sys 772.034 real
init: 1 calls 0.349 user 0.122 sys 0.847 real
overall: 852611072 mem 11.188 user 339.750 sys 3.539 real