.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:VCF_SOMATIC_SNV_INDEL:PREP_TNSEQ_SNV (HCC1395_tumor_vs_HCC1395_BL)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/1035f1f7a14597ed43d144cf7053c3/.command.log
Size: 665 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:VCF_SOMATIC_SNV_INDEL:PREP_TNSEQ_SNV (HCC1395_tumor_vs_HCC1395_BL)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/1035f1f7a14597ed43d144cf7053c3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/1035f1f7a14597ed43d144cf7053c3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/cb3af164d0ef2105fbd64289cfd4a2/HCC1395_tumor_vs_HCC1395_BL.tnseq.filtered.vcf.gz
==> STAGING COMPLETE (4 inputs)

Lines   total/split/joined/realigned/mismatch_removed/dup_removed/skipped:	247/43/0/111/0/0/0