File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/aefac152f5fbf6a2d479f5dade2abf/.command.log
Size
2.2 KB
Task
NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/b23d80977aa2ca17a2df558d7d0510/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs.bcftools_stats.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/594213266fc2a57aa97756794d2b4f/Sig_18_Blood.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/12698272b713486336d7df9e1a5cc4/custom_Sig_18_tumor_normal.tnseq.filtered_snpEff.ann.tmb.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/15a87906aa4f3829274914e5a52718/custom_Sig_18_tumor_normal.strelka.somatic_indels.bcftools_stats.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/b2e507ed6e5add3171da6704a81dba/ngscheckmate_all.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/c14bbfb4427b07d5dd2328ce5a85ff/custom_Sig_18_tumor_normal.strelka.somatic_snvs.bcftools_stats.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/aefac152f5fbf6a2d479f5dade2abf/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/790cf0dfb71dc292d641b4c2623bff/HCC1395_BL.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/1213fdb0b00268203e73d685028bd1/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels.bcftools_stats.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/aefac152f5fbf6a2d479f5dade2abf/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/e5500e451908e603fb73ccfdb7400e/Sig_18_tissue_vs_Sig_18_Blood.conpair.contamination.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/354d0946cd2f792ced50d1e362d1f2/HCC1395_tumor_vs_HCC1395_BL.conpair.contamination.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/6328a0c872701c52714faa7083dbe9/Sig_18_Blood.deconfliction_audit.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/24b58ac8c44d49371d133f9e32a63b/HCC1395_BL.deconfliction_audit.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/567327a7fc88d914eb08f9f9e9b155/HCC1395_tumor_vs_HCC1395_BL.tnseq.filtered_snpEff.ann.tmb.csv
==> STAGING COMPLETE (15 inputs)

Variant QC aggregation complete: 3 pairs, 2 samples
Output: variant_qc.json