File Info
- Filename
- HCC1395_tumor_vs_HCC1395_BL.tnseq.orientation_data.tsv
- Full Path
- s3://natera-rnd-pltf-dev-s3-gitlab-results/sarek/build2810611/regression-run/63904030/variant_calling/tnseq/HCC1395_tumor_vs_HCC1395_BL/HCC1395_tumor_vs_HCC1395_BL.tnseq.orientation_data.tsv
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- Workflow Run
- gitlab-sarek-build2810611-regression-run-63904030
- Published
- Jun 08, 2026 1:32 PM
Content
View in new tab| #<METADATA>SAMPLE=HCC1395_tumor | |||||||||||||||
| context | rev_comp | f1r2_a | f1r2_c | f1r2_g | f1r2_t | f2r1_a | f2r1_c | f2r1_g | f2r1_t | hom_ref | germline_het | somatic_het | hom_var | num_examples | num_alt_examples |
| AAA | TTT | 0 | 2.74296e-06 | 2.89401e-05 | 4.51223e-06 | 0 | 1.04216e-05 | 2.86559e-06 | 2.2119e-05 | 0.999148 | 0.000279904 | 0.000422567 | 7.77759e-05 | 39857 | 1885 |
| AAC | GTT | 0 | 5.52991e-06 | 0.000185144 | 5.3598e-06 | 0 | 1.36009e-05 | 6.25516e-06 | 5.36407e-06 | 0.998926 | 4.9223e-05 | 0.000531147 | 0.000272786 | 18695 | 1032 |
| AAG | CTT | 0 | 1.66266e-05 | 8.72001e-05 | 3.65749e-06 | 0 | 4.12078e-05 | 8.45136e-05 | 3.78415e-06 | 0.998542 | 0.000250167 | 0.000602368 | 0.000368312 | 27408 | 1995 |
| AAT | ATT | 0 | 4.44253e-06 | 9.3136e-05 | 4.50032e-06 | 0 | 2.10983e-05 | 1.11097e-05 | 4.24652e-06 | 0.999013 | 0.000196272 | 0.000358926 | 0.000293684 | 23679 | 1127 |
| ACA | TGT | 0.00096281 | 0 | 3.95982e-06 | 1.10281e-05 | 0.00140557 | 0 | 3.81859e-06 | 7.40368e-06 | 0.996058 | 1.05258e-05 | 0.00138357 | 0.00015369 | 26676 | 4134 |
| ACC | GGT | 0.000400148 | 0 | 5.01926e-06 | 5.29528e-06 | 0.000749904 | 0 | 5.21394e-06 | 1.19095e-05 | 0.997171 | 0.000465732 | 0.000932544 | 0.000253601 | 20103 | 2800 |
| ACG | CGT | 0.0018506 | 0 | 1.39781e-05 | 3.79928e-05 | 0.00219357 | 0 | 1.18023e-05 | 4.33256e-05 | 0.988576 | 0.00308886 | 0.00267099 | 0.00151258 | 8658 | 1915 |
| ACT | AGT | 0.000594731 | 0 | 1.10872e-05 | 9.94063e-06 | 0.00136333 | 0 | 5.19449e-06 | 6.20958e-06 | 0.996817 | 0.000357479 | 0.000480581 | 0.000354291 | 20039 | 2603 |
| AGA | TCT | 5.94933e-06 | 3.48149e-06 | 0 | 0.000242965 | 0.000112502 | 3.51764e-06 | 0 | 0.000231596 | 0.997909 | 7.60669e-05 | 0.00103833 | 0.000377006 | 29412 | 2951 |
| AGC | GCT | 2.371e-05 | 3.91017e-06 | 0 | 0.00168453 | 6.87799e-06 | 3.88616e-06 | 0 | 0.00171124 | 0.995524 | 0.00016149 | 0.000618335 | 0.000262155 | 26421 | 4532 |
| AGG | CCT | 4.35492e-06 | 3.39385e-06 | 0 | 0.000389659 | 8.36993e-05 | 3.67055e-06 | 0 | 0.000163198 | 0.998247 | 0.000278449 | 0.000460889 | 0.000365432 | 30374 | 4084 |
| AGT | ACT | 6.20958e-06 | 5.19449e-06 | 0 | 0.00136333 | 9.94063e-06 | 1.10872e-05 | 0 | 0.000594731 | 0.996817 | 0.000357479 | 0.000480581 | 0.000354291 | 20039 | 2603 |
| ATA | TAT | 5.76592e-06 | 1.07395e-05 | 3.24348e-05 | 0 | 1.52248e-05 | 7.9787e-05 | 3.11555e-05 | 0 | 0.998009 | 0.00046635 | 0.00111805 | 0.000231559 | 17705 | 1052 |
| ATC | GAT | 5.95511e-06 | 0.000105931 | 0.000104281 | 0 | 5.94613e-06 | 0.000280759 | 6.05494e-06 | 0 | 0.997964 | 0.00020744 | 0.000779113 | 0.000540669 | 16830 | 1068 |
| ATG | CAT | 4.56327e-06 | 5.34773e-06 | 6.16316e-05 | 0 | 4.39097e-06 | 0.00013746 | 8.82041e-06 | 0 | 0.996844 | 0.000412461 | 0.00159622 | 0.000924871 | 22813 | 1379 |
| ATT | AAT | 4.24652e-06 | 1.11097e-05 | 2.10983e-05 | 0 | 4.50032e-06 | 9.3136e-05 | 4.44253e-06 | 0 | 0.999013 | 0.000196272 | 0.000358926 | 0.000293684 | 23679 | 1127 |
| CAA | TTG | 0 | 4.93529e-06 | 4.92367e-06 | 4.44512e-06 | 0 | 3.16341e-05 | 2.42243e-05 | 4.62232e-06 | 0.999127 | 0.000453846 | 0.0001178 | 0.00022657 | 22507 | 1341 |
| CAC | GTG | 0 | 4.37767e-06 | 4.81646e-05 | 3.9062e-06 | 0 | 2.2109e-05 | 6.19735e-05 | 4.0705e-06 | 0.996978 | 0.000619175 | 0.00132038 | 0.000938061 | 25690 | 1718 |
| CAG | CTG | 0 | 2.83022e-06 | 0.000101546 | 2.61008e-06 | 0 | 2.70579e-06 | 4.21641e-05 | 2.69117e-06 | 0.99768 | 0.000639842 | 0.000827137 | 0.000698872 | 38415 | 3401 |
| CAT | ATG | 0 | 8.82041e-06 | 0.00013746 | 4.39097e-06 | 0 | 6.16316e-05 | 5.34773e-06 | 4.56327e-06 | 0.996844 | 0.000412461 | 0.00159622 | 0.000924871 | 22813 | 1379 |
| CCA | TGG | 0.000392942 | 0 | 3.393e-06 | 3.09459e-05 | 0.000868395 | 0 | 4.80882e-06 | 3.20504e-05 | 0.998044 | 0.000211815 | 0.000278409 | 0.000133605 | 30690 | 4256 |
| CCC | GGG | 3.98721e-05 | 0 | 3.43242e-06 | 3.62564e-06 | 0.000182904 | 0 | 3.41216e-06 | 4.25325e-06 | 0.998117 | 0.000313578 | 0.000993075 | 0.000339097 | 29784 | 3311 |
| CCG | CGG | 0.000575242 | 0 | 1.39389e-05 | 1.84565e-05 | 0.000840906 | 0 | 2.12902e-05 | 1.08012e-05 | 0.991836 | 0.00144503 | 0.003576 | 0.00166195 | 13368 | 2639 |
| CCT | AGG | 0.000163198 | 0 | 3.67055e-06 | 8.36993e-05 | 0.000389659 | 0 | 3.39385e-06 | 4.35492e-06 | 0.998247 | 0.000278449 | 0.000460889 | 0.000365432 | 30374 | 4084 |
| CGA | TCG | 2.03035e-05 | 1.48265e-05 | 0 | 0.00154113 | 4.52423e-05 | 1.42187e-05 | 0 | 0.00132039 | 0.991299 | 0.00203246 | 0.00230809 | 0.00140404 | 7192 | 1281 |
| CGC | GCG | 0.0004618 | 8.99779e-06 | 0 | 0.00207371 | 0.000242319 | 7.15907e-05 | 0 | 0.00199771 | 0.988196 | 0.00208355 | 0.00321455 | 0.00164962 | 11577 | 2859 |
| CGG | CCG | 1.08012e-05 | 2.12902e-05 | 0 | 0.000840906 | 1.84565e-05 | 1.39389e-05 | 0 | 0.000575242 | 0.991836 | 0.00144503 | 0.003576 | 0.00166195 | 13368 | 2639 |
| CGT | ACG | 4.33256e-05 | 1.18023e-05 | 0 | 0.00219357 | 3.79928e-05 | 1.39781e-05 | 0 | 0.0018506 | 0.988576 | 0.00308886 | 0.00267099 | 0.00151258 | 8658 | 1915 |
| CTA | TAG | 9.64411e-06 | 0.000151234 | 1.0104e-05 | 0 | 7.9642e-06 | 0.000113859 | 8.3063e-06 | 0 | 0.997777 | 0.000125996 | 0.00131163 | 0.000484742 | 12583 | 899 |
| CTC | GAG | 3.64832e-06 | 1.19312e-05 | 3.91179e-06 | 0 | 3.77008e-06 | 0.000286444 | 3.76607e-06 | 0 | 0.998368 | 5.24291e-05 | 0.0010107 | 0.00025512 | 27829 | 2416 |
| CTG | CAG | 2.69117e-06 | 4.21641e-05 | 2.70579e-06 | 0 | 2.61008e-06 | 0.000101546 | 2.83022e-06 | 0 | 0.99768 | 0.000639842 | 0.000827137 | 0.000698872 | 38415 | 3401 |
| CTT | AAG | 3.78415e-06 | 8.45136e-05 | 4.12078e-05 | 0 | 3.65749e-06 | 8.72001e-05 | 1.66266e-05 | 0 | 0.998542 | 0.000250167 | 0.000602368 | 0.000368312 | 27408 | 1995 |
| GAA | TTC | 0 | 3.89152e-06 | 8.68892e-06 | 3.71317e-06 | 0 | 7.23531e-06 | 8.34555e-06 | 3.7781e-06 | 0.999292 | 0.000160062 | 0.000397427 | 0.000114983 | 26953 | 1477 |
| GAC | GTC | 0 | 5.91659e-06 | 8.93682e-06 | 5.70055e-06 | 0 | 6.47812e-05 | 1.01093e-05 | 5.80497e-06 | 0.998368 | 0.000271097 | 0.000798256 | 0.000461407 | 17554 | 1158 |
| GAG | CTC | 0 | 3.76607e-06 | 0.000286444 | 3.77008e-06 | 0 | 3.91179e-06 | 1.19312e-05 | 3.64832e-06 | 0.998368 | 5.24291e-05 | 0.0010107 | 0.00025512 | 27829 | 2416 |
| GAT | ATC | 0 | 6.05494e-06 | 0.000280759 | 5.94613e-06 | 0 | 0.000104281 | 0.000105931 | 5.95511e-06 | 0.997964 | 0.00020744 | 0.000779113 | 0.000540669 | 16830 | 1068 |
| GCA | TGC | 0.00170105 | 0 | 3.88101e-06 | 6.50797e-05 | 0.00205716 | 0 | 3.85848e-06 | 6.7045e-05 | 0.995238 | 0.000209586 | 0.000500891 | 0.000153871 | 26309 | 4795 |
| GCC | GGC | 0.00063487 | 0 | 5.19859e-06 | 2.73249e-05 | 0.00241794 | 0 | 3.66332e-05 | 9.042e-06 | 0.995884 | 7.2395e-05 | 0.00065477 | 0.000258294 | 27487 | 4785 |
| GCG | CGC | 0.00199771 | 0 | 7.15907e-05 | 0.000242319 | 0.00207371 | 0 | 8.99779e-06 | 0.0004618 | 0.988196 | 0.00208355 | 0.00321455 | 0.00164962 | 11577 | 2859 |
| GCT | AGC | 0.00171124 | 0 | 3.88616e-06 | 6.87799e-06 | 0.00168453 | 0 | 3.91017e-06 | 2.371e-05 | 0.995524 | 0.00016149 | 0.000618335 | 0.000262155 | 26421 | 4532 |
| GGA | TCC | 6.19226e-06 | 3.75316e-06 | 0 | 0.000167911 | 3.99618e-06 | 4.73786e-05 | 0 | 5.54702e-05 | 0.998845 | 0.00042092 | 0.0002218 | 0.000227343 | 26825 | 2642 |
| GGC | GCC | 9.042e-06 | 3.66332e-05 | 0 | 0.00241794 | 2.73249e-05 | 5.19859e-06 | 0 | 0.00063487 | 0.995884 | 7.2395e-05 | 0.00065477 | 0.000258294 | 27487 | 4785 |
| GGG | CCC | 4.25325e-06 | 3.41216e-06 | 0 | 0.000182904 | 3.62564e-06 | 3.43242e-06 | 0 | 3.98721e-05 | 0.998117 | 0.000313578 | 0.000993075 | 0.000339097 | 29784 | 3311 |
| GGT | ACC | 1.19095e-05 | 5.21394e-06 | 0 | 0.000749904 | 5.29528e-06 | 5.01926e-06 | 0 | 0.000400148 | 0.997171 | 0.000465732 | 0.000932544 | 0.000253601 | 20103 | 2800 |
| GTA | TAC | 2.77251e-05 | 1.10043e-05 | 9.9377e-05 | 0 | 8.45311e-06 | 2.54453e-05 | 3.427e-05 | 0 | 0.997537 | 0.000328449 | 0.00155205 | 0.000376659 | 13539 | 863 |
| GTC | GAC | 5.80497e-06 | 1.01093e-05 | 6.47812e-05 | 0 | 5.70055e-06 | 8.93682e-06 | 5.91659e-06 | 0 | 0.998368 | 0.000271097 | 0.000798256 | 0.000461407 | 17554 | 1158 |
| GTG | CAC | 4.0705e-06 | 6.19735e-05 | 2.2109e-05 | 0 | 3.9062e-06 | 4.81646e-05 | 4.37767e-06 | 0 | 0.996978 | 0.000619175 | 0.00132038 | 0.000938061 | 25690 | 1718 |
| GTT | AAC | 5.36407e-06 | 6.25516e-06 | 1.36009e-05 | 0 | 5.3598e-06 | 0.000185144 | 5.52991e-06 | 0 | 0.998926 | 4.9223e-05 | 0.000531147 | 0.000272786 | 18695 | 1032 |
| TAA | TTA | 0 | 5.50654e-05 | 6.23947e-06 | 5.32718e-06 | 0 | 5.23808e-06 | 9.27515e-06 | 3.48804e-05 | 0.998344 | 0.000392889 | 0.000890765 | 0.000256546 | 20358 | 1011 |
| TAC | GTA | 0 | 3.427e-05 | 2.54453e-05 | 8.45311e-06 | 0 | 9.9377e-05 | 1.10043e-05 | 2.77251e-05 | 0.997537 | 0.000328449 | 0.00155205 | 0.000376659 | 13539 | 863 |
| TAG | CTA | 0 | 8.3063e-06 | 0.000113859 | 7.9642e-06 | 0 | 1.0104e-05 | 0.000151234 | 9.64411e-06 | 0.997777 | 0.000125996 | 0.00131163 | 0.000484742 | 12583 | 899 |
| TAT | ATA | 0 | 3.11555e-05 | 7.9787e-05 | 1.52248e-05 | 0 | 3.24348e-05 | 1.07395e-05 | 5.76592e-06 | 0.998009 | 0.00046635 | 0.00111805 | 0.000231559 | 17705 | 1052 |
| TCA | TGA | 0.000816765 | 0 | 4.14175e-06 | 4.18144e-06 | 0.000888166 | 0 | 3.94913e-06 | 4.25859e-06 | 0.99738 | 0.000302491 | 0.000284999 | 0.000310741 | 25731 | 3275 |
| TCC | GGA | 5.54702e-05 | 0 | 4.73786e-05 | 3.99618e-06 | 0.000167911 | 0 | 3.75316e-06 | 6.19226e-06 | 0.998845 | 0.00042092 | 0.0002218 | 0.000227343 | 26825 | 2642 |
| TCG | CGA | 0.00132039 | 0 | 1.42187e-05 | 4.52423e-05 | 0.00154113 | 0 | 1.48265e-05 | 2.03035e-05 | 0.991299 | 0.00203246 | 0.00230809 | 0.00140404 | 7192 | 1281 |
| TCT | AGA | 0.000231596 | 0 | 3.51764e-06 | 0.000112502 | 0.000242965 | 0 | 3.48149e-06 | 5.94933e-06 | 0.997909 | 7.60669e-05 | 0.00103833 | 0.000377006 | 29412 | 2951 |
| TGA | TCA | 4.25859e-06 | 3.94913e-06 | 0 | 0.000888166 | 4.18144e-06 | 4.14175e-06 | 0 | 0.000816765 | 0.99738 | 0.000302491 | 0.000284999 | 0.000310741 | 25731 | 3275 |
| TGC | GCA | 6.7045e-05 | 3.85848e-06 | 0 | 0.00205716 | 6.50797e-05 | 3.88101e-06 | 0 | 0.00170105 | 0.995238 | 0.000209586 | 0.000500891 | 0.000153871 | 26309 | 4795 |
| TGG | CCA | 3.20504e-05 | 4.80882e-06 | 0 | 0.000868395 | 3.09459e-05 | 3.393e-06 | 0 | 0.000392942 | 0.998044 | 0.000211815 | 0.000278409 | 0.000133605 | 30690 | 4256 |
| TGT | ACA | 7.40368e-06 | 3.81859e-06 | 0 | 0.00140557 | 1.10281e-05 | 3.95982e-06 | 0 | 0.00096281 | 0.996058 | 1.05258e-05 | 0.00138357 | 0.00015369 | 26676 | 4134 |
| TTA | TAA | 3.48804e-05 | 9.27515e-06 | 5.23808e-06 | 0 | 5.32718e-06 | 6.23947e-06 | 5.50654e-05 | 0 | 0.998344 | 0.000392889 | 0.000890765 | 0.000256546 | 20358 | 1011 |
| TTC | GAA | 3.7781e-06 | 8.34555e-06 | 7.23531e-06 | 0 | 3.71317e-06 | 8.68892e-06 | 3.89152e-06 | 0 | 0.999292 | 0.000160062 | 0.000397427 | 0.000114983 | 26953 | 1477 |
| TTG | CAA | 4.62232e-06 | 2.42243e-05 | 3.16341e-05 | 0 | 4.44512e-06 | 4.92367e-06 | 4.93529e-06 | 0 | 0.999127 | 0.000453846 | 0.0001178 | 0.00022657 | 22507 | 1341 |
| TTT | AAA | 2.2119e-05 | 2.86559e-06 | 1.04216e-05 | 0 | 4.51223e-06 | 2.89401e-05 | 2.74296e-06 | 0 | 0.999148 | 0.000279904 | 0.000422567 | 7.77759e-05 | 39857 | 1885 |
66 rows