File Info

Filename
HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels_custom.ann_snpEff.genes.txt
Full Path
s3://natera-rnd-pltf-dev-s3-gitlab-results/sarek/build2810611/regression-run/63904030/reports/raw_qc/snpeff/strelka/HCC1395_tumor_vs_HCC1395_BL/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels_custom.ann_snpEff.genes.txt
Size
4.2 KB
Workflow Run
gitlab-sarek-build2810611-regression-run-63904030
Published
Jun 08, 2026 1:41 PM

Content

View in new tab 
# The following table is formatted as tab separated values. 
#GeneName	GeneId	TranscriptId	BioType	variants_impact_LOW	variants_impact_MODERATE	variants_impact_MODIFIER	variants_effect_3_prime_UTR_variant	variants_effect_5_prime_UTR_variant	variants_effect_conservative_inframe_deletion	variants_effect_disruptive_inframe_deletion	variants_effect_disruptive_inframe_insertion	variants_effect_downstream_gene_variant	variants_effect_intron_variant	variants_effect_non_coding_transcript_exon_variant	variants_effect_non_coding_transcript_variant	variants_effect_splice_region_variant	variants_effect_upstream_gene_variant
APP	ENSG00000142192	ENST00000346798	protein_coding	0	1	0	0	0	0	1	0	0	0	0	0	0	0
ATP5PF	ENSG00000154723	ENST00000400099	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0
BRWD1	ENSG00000185658	ENST00000333229	protein_coding	0	0	1	0	0	0	0	0	1	0	0	0	0	0
C21orf58	ENSG00000160298	ENST00000291691	protein_coding	0	1	0	0	0	0	0	1	0	0	0	0	0	0
CBR1	ENSG00000159228	ENST00000290349	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0
CBR3	ENSG00000159231	ENST00000290354	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0
CBR3-AS1	ENSG00000236830	ENST00000432988	retained_intron	0	0	1	0	0	0	0	0	0	1	0	0	0	0
CCT8	ENSG00000156261	ENST00000286788	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0
CFAP410	ENSG00000160226	ENST00000397956	protein_coding	0	1	0	0	0	1	0	0	0	0	0	0	0	0
COL18A1	ENSG00000182871	ENST00000359759	protein_coding	0	1	0	0	0	0	1	0	0	0	0	0	0	0
COL6A1	ENSG00000142156	ENST00000361866	protein_coding	0	0	2	0	0	0	0	0	0	2	0	0	0	0
COL6A2	ENSG00000142173	ENST00000300527	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0
DIP2A	ENSG00000160305	ENST00000651436	protein_coding	0	0	2	0	0	0	0	0	0	2	0	0	0	0
DONSON	ENSG00000159147	ENST00000303071	protein_coding	0	0	1	0	0	0	0	0	1	0	0	0	0	0
DOP1B	ENSG00000142197	ENST00000399151	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0
DSCAM	ENSG00000171587	ENST00000400454	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0
ENSG00000184441	ENSG00000184441	ENST00000448927		0	0	1	0	0	0	0	0	0	0	0	0	0	1
ENSG00000228137	ENSG00000228137	ENST00000444966		0	0	1	0	0	0	0	0	0	0	0	0	0	1
ENSG00000230212	ENSG00000230212	ENST00000535199		0	0	1	0	0	0	0	0	0	1	0	0	0	0
ENSG00000241728	ENSG00000241728	ENST00000422357		0	0	1	0	0	0	0	0	0	0	0	0	0	1
ENSG00000272991	ENSG00000272991	ENST00000608767		0	0	1	0	0	0	0	0	0	0	0	0	0	1
ENSG00000273840	ENSG00000273840	ENST00000612267		1	0	1	0	0	0	0	0	0	2	0	0	1	0
ENSG00000286153	ENSG00000286153	ENST00000651798		0	0	1	0	0	0	0	0	1	0	0	0	0	0
ENSG00000289001	ENSG00000289001	ENST00000692721		0	0	1	0	0	0	0	0	1	0	0	0	0	0
HLCS	ENSG00000159267	ENST00000674895	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0
IFNGR2	ENSG00000159128	ENST00000381995	protein_coding	0	1	0	0	0	0	1	0	0	0	0	0	0	0
LINC01426	ENSG00000234380	ENST00000420877		0	0	1	0	0	0	0	0	1	0	0	0	0	0
LIPI	ENSG00000188992	ENST00000681601	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0
LSS	ENSG00000160285	ENST00000356396	protein_coding	0	0	3	0	1	0	0	0	0	0	0	1	0	1
LTN1	ENSG00000198862	ENST00000614971	protein_coding	0	0	2	0	0	0	0	0	0	2	0	0	0	0
MCM3AP	ENSG00000160294	ENST00000291688	protein_coding	1	0	0	0	0	0	0	0	0	1	0	0	1	0
MCM3AP-AS1	ENSG00000215424	ENST00000664725		0	0	2	0	0	0	0	0	0	0	1	0	0	1
NCAM2	ENSG00000154654	ENST00000400546	protein_coding	0	0	2	0	0	0	0	0	0	2	0	0	0	0
PCNT	ENSG00000160299	ENST00000359568	protein_coding	0	0	2	0	0	0	0	0	0	2	0	0	0	0
PFKL	ENSG00000141959	ENST00000349048	protein_coding	0	0	2	0	0	0	0	0	1	1	0	0	0	0
PSMG1	ENSG00000183527	ENST00000331573	protein_coding	0	1	0	0	0	0	1	0	0	0	0	0	0	0
RNU6-992P	ENSG00000200213	ENST00000363343	snRNA	0	0	1	0	0	0	0	0	1	0	0	0	0	0
RRP1B	ENSG00000160208	ENST00000340648	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0
RUNX1	ENSG00000159216	ENST00000300305	protein_coding	0	0	3	2	0	0	0	0	0	1	0	0	0	0
SON	ENSG00000159140	ENST00000356577	protein_coding	1	0	0	0	0	0	0	0	0	1	0	0	1	0
TMPRSS2	ENSG00000184012	ENST00000679263	protein_coding	0	0	3	0	0	0	0	0	0	3	0	0	0	0
TPTE	ENSG00000274391	ENST00000618007	protein_coding	1	0	1	0	0	0	0	0	0	2	0	0	1	0
TTC3	ENSG00000182670	ENST00000354749	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0
URB1	ENSG00000142207	ENST00000382751	protein_coding	0	0	1	0	0	0	0	0	0	1	0	0	0	0
USP25	ENSG00000155313	ENST00000400183	protein_coding	1	0	1	0	0	0	0	0	0	2	0	0	1	0
YBEY	ENSG00000182362	ENST00000329319	protein_coding	0	0	1	0	0	0	0	0	1	0	0	0	0	0