|
succeeded
|
NFCORE_SAREK:SAREK:BAM_QC_SEX_ESTIMATION:BAM_ESTIMATE_SEX (HCC1395_tumor)
|
1m 32s |
1m 28s |
- |
- |
3.2 MB |
128% |
2.3 MB |
108.4 KB |
0 bytes |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_tumor)
|
1m 45s |
1m 27s |
8s |
10s |
9.1 MB |
129% |
318.0 MB |
131.5 KB |
0 bytes |
132.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_tumor)
|
2m 17s |
1m 38s |
30s |
9s |
1.9 GB |
111% |
333.5 MB |
9.7 MB |
287.6 MB |
9.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_PROBE_COUNTS (HCC1395_tumor)
|
1m 47s |
1m 42s |
2s |
2s |
25.6 MB |
104% |
321.0 MB |
2.2 MB |
0 bytes |
656.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_ALLELE_COUNTS (HCC1395_tumor)
|
1m 46s |
1m 41s |
1s |
3s |
45.9 MB |
225% |
352.7 MB |
25.2 MB |
0 bytes |
6.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_tumor)
|
2m 16s |
2m 3s |
3s |
9s |
532.4 MB |
283% |
183.4 MB |
2.2 MB |
0 bytes |
2.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (HCC1395_tumor)
|
7s |
3s |
1s |
2s |
207.5 MB |
1931% |
61.8 MB |
204.9 KB |
0 bytes |
212.0 KB |
1 |