[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXgAah8j/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXgAah8j/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXgAah8j/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXgAah8j/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXgAah8j/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[2026-06-08T20:33:17.132438Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T20:33:17.136783Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] pyFlowClientWorkflowClass: MantaWorkflow
[2026-06-08T20:33:17.136805Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T20:33:17.136811Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T20:33:17.136815Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXgAah8j'
[2026-06-08T20:33:17.136819Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/manta/runWorkflow.py -m local -j 14'
[2026-06-08T20:33:17.136826Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T20:33:17.136830Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] [RunParameters] nCores: 14
[2026-06-08T20:33:17.136833Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T20:33:17.136837Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/manta/workspace/pyflow.data
[2026-06-08T20:33:17.136840Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T20:33:17.136844Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T20:33:17.136847Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T20:33:17.136851Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T20:33:17.137801Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T20:33:17.137861Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [MantaWorkflow] Initiating Manta workflow version: 1.6.0
[2026-06-08T20:33:17.138131Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'getAlignmentStats_makeTmpDir' to master workflow
[2026-06-08T20:33:17.138608Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'getAlignmentStats_makeTmpDir' from master workflow
[2026-06-08T20:33:17.138918Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'getAlignmentStats_generateStats_000' to master workflow
[2026-06-08T20:33:17.139119Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'getAlignmentStats_generateStats_001' to master workflow
[2026-06-08T20:33:17.139616Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'getAlignmentStats_mergeStats' to master workflow
[2026-06-08T20:33:17.139977Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'getAlignmentStats_removeTmpDir' to master workflow
[2026-06-08T20:33:17.142642Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'summarizeStats' to master workflow
[2026-06-08T20:33:17.142893Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'makeGraphTmpDir' to master workflow
[2026-06-08T20:33:17.143544Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:getAlignmentStats_makeTmpDir] Task initiated on local node
[2026-06-08T20:33:17.175940Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'getAlignmentStats_makeTmpDir' launched from master workflow
[2026-06-08T20:33:17.176351Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'getAlignmentStats_generateStats_001' from master workflow
[2026-06-08T20:33:17.176647Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'getAlignmentStats_generateStats_000' from master workflow
[2026-06-08T20:33:17.179758Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:getAlignmentStats_generateStats_000] Task initiated on local node
[2026-06-08T20:33:17.180513Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:getAlignmentStats_generateStats_001] Task initiated on local node
[2026-06-08T20:33:17.406623Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000' to master workflow
[2026-06-08T20:33:17.652056Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000' to master workflow
[2026-06-08T20:33:17.652320Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding sub-workflow task 'mergeLocusGraphInputList' to master workflow
[2026-06-08T20:33:17.652408Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'mergeLocusGraph' to master workflow
[2026-06-08T20:33:17.652475Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'checkLocusGraph' to master workflow
[2026-06-08T20:33:17.652543Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'removeTmpDir' to master workflow
[2026-06-08T20:33:17.652609Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'locusGraphStats' to master workflow
[2026-06-08T20:33:17.652851Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'makeHyGenDir' to master workflow
[2026-06-08T20:33:17.652974Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'generateCandidateSV_0000' to master workflow
[2026-06-08T20:33:17.653065Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'fixVcfHeader_sortCandidateSV' to master workflow
[2026-06-08T20:33:17.653177Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding sub-workflow task 'sortCandidateSVInputList' to master workflow
[2026-06-08T20:33:17.653244Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'sort_sortCandidateSV' to master workflow
[2026-06-08T20:33:17.653310Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'tabix_sortCandidateSV' to master workflow
[2026-06-08T20:33:17.653374Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'fixVcfHeader_sortDiploidSV' to master workflow
[2026-06-08T20:33:17.653468Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding sub-workflow task 'sortDiploidSVInputList' to master workflow
[2026-06-08T20:33:17.653540Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'sort_sortDiploidSV' to master workflow
[2026-06-08T20:33:17.653602Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'tabix_sortDiploidSV' to master workflow
[2026-06-08T20:33:17.653664Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'fixVcfHeader_sortSomaticSV' to master workflow
[2026-06-08T20:33:17.653757Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding sub-workflow task 'sortSomaticSVInputList' to master workflow
[2026-06-08T20:33:17.653818Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'sort_sortSomaticSV' to master workflow
[2026-06-08T20:33:17.653888Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'tabix_sortSomaticSV' to master workflow
[2026-06-08T20:33:17.653961Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'extractSmallIndels' to master workflow
[2026-06-08T20:33:17.654023Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'extractSmallIndels_tabix' to master workflow
[2026-06-08T20:33:17.654117Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding sub-workflow task 'sortEdgeRuntimeLogsInputList' to master workflow
[2026-06-08T20:33:17.654186Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Adding command task 'sortEdgeRuntimeLogs' to master workflow
[2026-06-08T20:33:17.654226Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T20:33:20.677399Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'getAlignmentStats_generateStats_000' launched from master workflow
[2026-06-08T20:33:30.942712Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'getAlignmentStats_generateStats_001' launched from master workflow
[2026-06-08T20:33:30.943282Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'getAlignmentStats_mergeStats' from master workflow
[2026-06-08T20:33:30.946178Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:getAlignmentStats_mergeStats] Task initiated on local node
[2026-06-08T20:33:31.008631Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'getAlignmentStats_mergeStats' launched from master workflow
[2026-06-08T20:33:31.009008Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'makeGraphTmpDir' from master workflow
[2026-06-08T20:33:31.009673Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'getAlignmentStats_removeTmpDir' from master workflow
[2026-06-08T20:33:31.011242Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'summarizeStats' from master workflow
[2026-06-08T20:33:31.012852Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:makeGraphTmpDir] Task initiated on local node
[2026-06-08T20:33:31.013584Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:getAlignmentStats_removeTmpDir] Task initiated on local node
[2026-06-08T20:33:31.016131Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:summarizeStats] Task initiated on local node
[2026-06-08T20:33:31.077362Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'makeGraphTmpDir' launched from master workflow
[2026-06-08T20:33:31.077425Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'getAlignmentStats_removeTmpDir' launched from master workflow
[2026-06-08T20:33:31.077446Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'summarizeStats' launched from master workflow
[2026-06-08T20:33:31.077766Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000' from master workflow
[2026-06-08T20:33:31.078427Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000' from master workflow
[2026-06-08T20:33:31.096996Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000] Task initiated on local node
[2026-06-08T20:33:31.097872Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000] Task initiated on local node
[2026-06-08T20:33:48.297856Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000' launched from master workflow
[2026-06-08T20:33:58.964301Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000' launched from master workflow
[2026-06-08T20:33:58.965174Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching sub-workflow task: 'mergeLocusGraphInputList' from master workflow
[2026-06-08T20:33:58.965578Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:mergeLocusGraphInputList] Starting task specification for sub-workflow
[2026-06-08T20:33:58.965887Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:mergeLocusGraphInputList] Finished task specification for sub-workflow
[2026-06-08T20:33:58.967017Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed sub-workflow task: 'mergeLocusGraphInputList' launched from master workflow
[2026-06-08T20:33:58.967471Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'mergeLocusGraph' from master workflow
[2026-06-08T20:33:58.970592Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:mergeLocusGraph] Task initiated on local node
[2026-06-08T20:33:59.032792Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'mergeLocusGraph' launched from master workflow
[2026-06-08T20:33:59.033153Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'locusGraphStats' from master workflow
[2026-06-08T20:33:59.033865Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'checkLocusGraph' from master workflow
[2026-06-08T20:33:59.034603Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'removeTmpDir' from master workflow
[2026-06-08T20:33:59.039113Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:locusGraphStats] Task initiated on local node
[2026-06-08T20:33:59.039341Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:checkLocusGraph] Task initiated on local node
[2026-06-08T20:33:59.040371Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:removeTmpDir] Task initiated on local node
[2026-06-08T20:33:59.070202Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'locusGraphStats' launched from master workflow
[2026-06-08T20:33:59.070262Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'checkLocusGraph' launched from master workflow
[2026-06-08T20:33:59.070283Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'removeTmpDir' launched from master workflow
[2026-06-08T20:33:59.070584Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'makeHyGenDir' from master workflow
[2026-06-08T20:33:59.073455Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:makeHyGenDir] Task initiated on local node
[2026-06-08T20:33:59.103132Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'makeHyGenDir' launched from master workflow
[2026-06-08T20:33:59.103448Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'generateCandidateSV_0000' from master workflow
[2026-06-08T20:33:59.106098Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:generateCandidateSV_0000] Task initiated on local node
[2026-06-08T20:34:04.969679Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'generateCandidateSV_0000' launched from master workflow
[2026-06-08T20:34:04.970124Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching sub-workflow task: 'sortEdgeRuntimeLogsInputList' from master workflow
[2026-06-08T20:34:04.970402Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:sortEdgeRuntimeLogsInputList] Starting task specification for sub-workflow
[2026-06-08T20:34:04.970618Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:sortEdgeRuntimeLogsInputList] Finished task specification for sub-workflow
[2026-06-08T20:34:04.970992Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'fixVcfHeader_sortCandidateSV' from master workflow
[2026-06-08T20:34:04.971805Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'fixVcfHeader_sortDiploidSV' from master workflow
[2026-06-08T20:34:04.973756Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'fixVcfHeader_sortSomaticSV' from master workflow
[2026-06-08T20:34:04.974282Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed sub-workflow task: 'sortEdgeRuntimeLogsInputList' launched from master workflow
[2026-06-08T20:34:04.974704Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:fixVcfHeader_sortCandidateSV] Task initiated on local node
[2026-06-08T20:34:04.975009Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'sortEdgeRuntimeLogs' from master workflow
[2026-06-08T20:34:04.978192Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:fixVcfHeader_sortDiploidSV] Task initiated on local node
[2026-06-08T20:34:04.979708Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:fixVcfHeader_sortSomaticSV] Task initiated on local node
[2026-06-08T20:34:04.980624Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:sortEdgeRuntimeLogs] Task initiated on local node
[2026-06-08T20:34:05.040120Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'sortEdgeRuntimeLogs' launched from master workflow
[2026-06-08T20:34:05.040183Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'fixVcfHeader_sortSomaticSV' launched from master workflow
[2026-06-08T20:34:05.040206Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'fixVcfHeader_sortDiploidSV' launched from master workflow
[2026-06-08T20:34:05.040227Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'fixVcfHeader_sortCandidateSV' launched from master workflow
[2026-06-08T20:34:05.040439Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching sub-workflow task: 'sortDiploidSVInputList' from master workflow
[2026-06-08T20:34:05.040728Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:sortDiploidSVInputList] Starting task specification for sub-workflow
[2026-06-08T20:34:05.040984Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching sub-workflow task: 'sortCandidateSVInputList' from master workflow
[2026-06-08T20:34:05.041292Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:sortDiploidSVInputList] Finished task specification for sub-workflow
[2026-06-08T20:34:05.041790Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:sortCandidateSVInputList] Starting task specification for sub-workflow
[2026-06-08T20:34:05.041953Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:sortCandidateSVInputList] Finished task specification for sub-workflow
[2026-06-08T20:34:05.042056Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching sub-workflow task: 'sortSomaticSVInputList' from master workflow
[2026-06-08T20:34:05.042428Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:sortSomaticSVInputList] Starting task specification for sub-workflow
[2026-06-08T20:34:05.042578Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:sortSomaticSVInputList] Finished task specification for sub-workflow
[2026-06-08T20:34:05.042922Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed sub-workflow task: 'sortDiploidSVInputList' launched from master workflow
[2026-06-08T20:34:05.042976Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed sub-workflow task: 'sortCandidateSVInputList' launched from master workflow
[2026-06-08T20:34:05.042996Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed sub-workflow task: 'sortSomaticSVInputList' launched from master workflow
[2026-06-08T20:34:05.043190Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'sort_sortDiploidSV' from master workflow
[2026-06-08T20:34:05.043791Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'sort_sortCandidateSV' from master workflow
[2026-06-08T20:34:05.044392Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'sort_sortSomaticSV' from master workflow
[2026-06-08T20:34:05.047464Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:sort_sortCandidateSV] Task initiated on local node
[2026-06-08T20:34:05.049735Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:sort_sortDiploidSV] Task initiated on local node
[2026-06-08T20:34:05.050559Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:sort_sortSomaticSV] Task initiated on local node
[2026-06-08T20:34:05.111785Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'sort_sortDiploidSV' launched from master workflow
[2026-06-08T20:34:05.111859Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'sort_sortCandidateSV' launched from master workflow
[2026-06-08T20:34:05.111883Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'sort_sortSomaticSV' launched from master workflow
[2026-06-08T20:34:05.112110Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'extractSmallIndels' from master workflow
[2026-06-08T20:34:05.112690Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'tabix_sortDiploidSV' from master workflow
[2026-06-08T20:34:05.114029Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'tabix_sortCandidateSV' from master workflow
[2026-06-08T20:34:05.114562Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:extractSmallIndels] Task initiated on local node
[2026-06-08T20:34:05.116217Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'tabix_sortSomaticSV' from master workflow
[2026-06-08T20:34:05.117142Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:tabix_sortCandidateSV] Task initiated on local node
[2026-06-08T20:34:05.119736Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:tabix_sortDiploidSV] Task initiated on local node
[2026-06-08T20:34:05.120352Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:tabix_sortSomaticSV] Task initiated on local node
[2026-06-08T20:34:05.148447Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'tabix_sortSomaticSV' launched from master workflow
[2026-06-08T20:34:05.148512Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'tabix_sortCandidateSV' launched from master workflow
[2026-06-08T20:34:05.148536Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'tabix_sortDiploidSV' launched from master workflow
[2026-06-08T20:34:05.156035Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'extractSmallIndels' launched from master workflow
[2026-06-08T20:34:05.156233Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Launching command task: 'extractSmallIndels_tabix' from master workflow
[2026-06-08T20:34:05.158604Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskRunner:extractSmallIndels_tabix] Task initiated on local node
[2026-06-08T20:34:05.188231Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [TaskManager] Completed command task: 'extractSmallIndels_tabix' launched from master workflow
[2026-06-08T20:34:05.757654Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Manta workflow successfully completed.
[2026-06-08T20:34:05.757654Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] 
[2026-06-08T20:34:05.757654Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] 	workflow version: 1.6.0
[2026-06-08T20:34:05.757680Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] 
[2026-06-08T20:34:05.757686Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T20:34:05.757690Z] [nf-64edcc998f347eca1dd70ec8970f217a-ad07b-7lrnk] [636_1] [WorkflowRunner] Elapsed time for full workflow: 48 sec