.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (HCC1395_BL)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/3ca7fd09e2394569f7bb4e2691027b/.command.log
Size: 780 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (HCC1395_BL)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/3ca7fd09e2394569f7bb4e2691027b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/3ca7fd09e2394569f7bb4e2691027b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/de2343c3c483e997871d225f824568/HCC1395_BL.haplotyper.split.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/57f1f45abb1dc6d7d993ebba202cd1/HCC1395_BL.mpileup.gz
==> STAGING COMPLETE (4 inputs)

Parsing mpileup: HCC1395_BL.mpileup.gz
Found 20 positions with indel observations
Annotating VCF: HCC1395_BL.haplotyper.split.vcf.gz
[E::idx_find_and_load] Could not retrieve index file for 'HCC1395_BL.haplotyper.split.vcf.gz'
Output written to: HCC1395_BL.entropy.vcf