.command.err - Workdir - NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (HCC1395_BL)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/2bbcc4e93222e2e85af74735d7bf7d/.command.err
Size: 670 bytes
Task: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (HCC1395_BL)
Attempt

Content

/tmp/nxf.92bOl1ICke/nextflow-bin/merge_vcf_characteristics.py:260: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
  return int(variant.format('DP')[sample_idx])
/tmp/nxf.92bOl1ICke/nextflow-bin/merge_vcf_characteristics.py:262: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
  return int(variant.format('GQ')[sample_idx])