.command.out - Workdir - NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (HCC1395_BL)

File Info

Filename: .command.out
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/2bbcc4e93222e2e85af74735d7bf7d/.command.out
Size: 453 bytes
Task: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (HCC1395_BL)
Attempt

Content

[INFO] Reading target VCF: HCC1395_BL.chip.harmonized.vcf.gz
[INFO] Reading source VCF: HCC1395_BL.germline.harmonized.vcf.gz
[INFO] Adding header fields with prefix 'GERMLINE' for: GT, AD, DP, GQ, QD
[INFO] Building source variant lookup...
[INFO] Found 354 variants in source VCF
[INFO] Processing target variants and merging characteristics...
[INFO] Complete! Processed 254 variants, matched 41 (16.1%)
[SUCCESS] VCF merging completed successfully!