File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/1079999f0cb1da3af0e1af2f4d2b31/.command.log
Size
1.2 KB
Task
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_EXPORT_VIEWER (custom_Sig_18_tumor_normal)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/1079999f0cb1da3af0e1af2f4d2b31/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/a8f10a29ce663e474f60c80705059f/custom_Sig_18_tumor_normal_probe_agg.tsv.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/1079999f0cb1da3af0e1af2f4d2b31/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/a8f10a29ce663e474f60c80705059f/custom_Sig_18_tumor_normal_segments.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/a8f10a29ce663e474f60c80705059f/pairs.tsv
==> STAGING COMPLETE (5 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-qh3h_pfw because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
Batch mode: 1 of 1 specimens
Loaded probe_agg for 1 specimens (4,632 probes) in 0.0s
Computed genome offsets
Exporting 1 specimens with 4 workers...

  [1/1]
Exported 1 specimens to viewer/ (0 MB total) in 0.1s