cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_BL --max_event_count 5 -v HCC1395_BL.tnseq_tumor_only.vcf.gz --contamination HCC1395_BL.tnseq_tumor_only.contamination_data.tsv --tumor_segments HCC1395_BL.tnseq_tumor_only.segments --orientation_priors HCC1395_BL.tnseq_tumor_only.orientation_data.tsv HCC1395_BL.tnseq_tumor_only.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:108000001, elapsed 0.1s, est remaining 2.3s, peak mem 813MB, user 0.1s, sys 4.3s, output queue size 153
progress 10% @chr1:147000001, elapsed 0.2s, est remaining 2.0s, peak mem 813MB, user 0.2s, sys 13.5s, output queue size 314
progress 15% @chr4:100000001, elapsed 0.3s, est remaining 1.7s, peak mem 813MB, user 0.3s, sys 26.0s, output queue size 477
progress 20% @chr4:174000001, elapsed 0.4s, est remaining 1.4s, peak mem 813MB, user 0.6s, sys 36.6s, output queue size 533
progress 25% @chr4:87000001, elapsed 0.4s, est remaining 1.3s, peak mem 813MB, user 0.9s, sys 49.2s, output queue size 695
progress 30% @chr7:3000001, elapsed 0.5s, est remaining 1.1s, peak mem 813MB, user 1.3s, sys 64.2s, output queue size 855
progress 35% @chr7:96000001, elapsed 0.5s, est remaining 1.0s, peak mem 813MB, user 1.7s, sys 76.5s, output queue size 1017
progress 40% @chr8:113000001, elapsed 0.6s, est remaining 0.9s, peak mem 813MB, user 2.3s, sys 88.3s, output queue size 1179
progress 45% @chr9:134000001, elapsed 0.7s, est remaining 0.8s, peak mem 813MB, user 2.7s, sys 100.2s, output queue size 1340
progress 50% @chr7:4000001, elapsed 0.7s, est remaining 0.7s, peak mem 813MB, user 3.3s, sys 117.8s, output queue size 1502
progress 55% @chr12:16000001, elapsed 0.8s, est remaining 0.6s, peak mem 813MB, user 3.9s, sys 137.0s, output queue size 1663
progress 60% @chr12:43000001, elapsed 0.8s, est remaining 0.6s, peak mem 813MB, user 4.4s, sys 157.4s, output queue size 1825
progress 65% @chr15:77000001, elapsed 0.9s, est remaining 0.5s, peak mem 813MB, user 4.8s, sys 177.2s, output queue size 1987
progress 70% @chr17:46000001, elapsed 1.0s, est remaining 0.4s, peak mem 813MB, user 5.3s, sys 190.0s, output queue size 2149
progress 75% @chr12:113000001, elapsed 1.0s, est remaining 0.3s, peak mem 813MB, user 5.9s, sys 204.1s, output queue size 2310
progress 80% @chr14:66000001, elapsed 1.1s, est remaining 0.3s, peak mem 813MB, user 6.5s, sys 221.8s, output queue size 2472
progress 85% @chr18:1, elapsed 1.2s, est remaining 0.2s, peak mem 813MB, user 7.1s, sys 240.3s, output queue size 2637
progress 90% @chr4_GL000257v2_alt:1, elapsed 1.2s, est remaining 0.1s, peak mem 813MB, user 7.5s, sys 259.6s, output queue size 2993
progress 95% @chr2:132000001, elapsed 1.3s, est remaining 0.1s, peak mem 813MB, user 8.1s, sys 278.3s, output queue size 3342
progress 100% @HLA-DRB1*04:03:01:1, elapsed 1.8s, est remaining 0.0s, peak mem 813MB, user 8.9s, sys 326.7s, output queue size 465
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 51811
output file size: 43438
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 540 calls 0.003 user 0.001 sys 0.012 real
"predict_filter": 180 calls 0.015 user 0.009 sys 0.076 real
advance: 3219322 calls 0.621 user 118.777 sys 122.749 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.009 user 0.000 sys 1.940 real
fetch_ref: 528 calls 0.001 user 0.030 sys 0.233 real
idle: 20633 calls 0.741 user 0.320 sys 820.058 real
init: 1 calls 0.363 user 0.160 sys 0.969 real
overall: 852627456 mem 11.148 user 334.369 sys 4.130 real