Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/HCC1395_tumor/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/regression_padded_intervals/scatter/chr21_44102678-44103072.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/0882c8d31bf403acc372c21ce542a6/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/HCC1395_tumor/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/HCC1395_BL/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/HCC1395_BL/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/regression_padded_intervals/scatter/chr21_44102678-44103072.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/4e02ab4e557de4cd6b33e3cccf64cd/HCC1395_tumor_vs_HCC1395_BL.manta.candidate_small_indels.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/4e02ab4e557de4cd6b33e3cccf64cd/HCC1395_tumor_vs_HCC1395_BL.manta.candidate_small_indels.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/0882c8d31bf403acc372c21ce542a6/.command.run
==> STAGING COMPLETE (12 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T20:35:12.588739Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T20:35:12.589958Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T20:35:12.589985Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T20:35:12.589992Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T20:35:12.589997Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXbS9wlD'
[2026-06-08T20:35:12.590001Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T20:35:12.590006Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T20:35:12.590010Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T20:35:12.590014Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T20:35:12.590018Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T20:35:12.590021Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T20:35:12.590025Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T20:35:12.590028Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T20:35:12.590032Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T20:35:12.591054Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T20:35:12.591159Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T20:35:12.597010Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T20:35:12.597667Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T20:35:12.598004Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T20:35:12.598333Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T20:35:12.598510Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.599693Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.600008Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.600177Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.600626Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.600905Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.601016Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.601145Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.601487Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.609332Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T20:35:12.615498Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.615636Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.615716Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.615806Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.615877Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.616017Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.616087Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.616164Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.616233Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.616279Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T20:35:12.650444Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.650718Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.651424Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.652462Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.653137Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.655992Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T20:35:12.656369Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T20:35:12.659864Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T20:35:12.661255Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T20:35:12.770816Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.770883Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.770912Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.771231Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.771661Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.772409Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.775730Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T20:35:12.777624Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T20:35:12.778398Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T20:35:12.808162Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.816127Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.823607Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.823931Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.826420Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T20:35:12.888192Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:26.108839Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:26.109224Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T20:35:26.112342Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T20:35:26.173774Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:26.173934Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:26.174061Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:35:26.174676Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T20:35:26.176320Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:35:26.177111Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T20:35:26.179921Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T20:35:26.210963Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T20:35:26.241355Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:26.241425Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:26.241450Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:26.241638Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:35:26.242265Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:35:26.245152Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T20:35:26.246094Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T20:35:26.274536Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:26.274608Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:26.274781Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T20:35:26.276902Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T20:35:26.306790Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:31.521055Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T20:35:45.709820Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T20:35:45.709820Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] 
[2026-06-08T20:35:45.709820Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T20:35:45.709887Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] 
[2026-06-08T20:35:45.709896Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T20:35:45.709903Z] [nf-040882c8d31bf403acc372c21ce542a6-292da-7v9gr] [689_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec