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Filename
multiqc_data/multiqc_bcftools_stats.txt
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/2378b5e5d43c0ff19858b16f8b70a5/multiqc_data/multiqc_bcftools_stats.txt
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1.7 KB
Attempt
Sample	number_of_samples	number_of_records	number_of_no-ALTs	number_of_SNPs	number_of_MNPs	number_of_indels	number_of_others	number_of_multiallelic_sites	number_of_multiallelic_SNP_sites	ts	tv	tstv	ts_1st_ALT	tv_1st_ALT	tstv_1st_ALT	substitution_type_A>C	substitution_type_A>G	substitution_type_A>T	substitution_type_C>A	substitution_type_C>G	substitution_type_C>T	substitution_type_G>A	substitution_type_G>C	substitution_type_G>T	substitution_type_T>A	substitution_type_T>C	substitution_type_T>G
HCC1395_BL	1	4	2	0	0	0	2	0	0	0	0	0.0	0	0	0.0	0	0	0	0	0	0	0	0	0	0	0	0
HCC1395_BL.deconflicted_germline	1	354	0	334	0	20	0	0	0	261	73	3.58	261	73	3.58	8	57	4	8	13	73	67	20	6	5	64	9
HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv	1	3	0	0	0	0	1	0	0	0	0	0.0	0	0	0.0	0	0	0	0	0	0	0	0	0	0	0	0
HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv	2	2	0	0	0	0	0	0	0	0	0	0.0	0	0	0.0	0	0	0	0	0	0	0	0	0	0	0	0
HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels	2	42	0	0	0	42	0	0	0	0	0	0.0	0	0	0.0	0	0	0	0	0	0	0	0	0	0	0	0
HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs	2	300	0	300	0	0	0	0	0	155	145	1.07	155	145	1.07	12	17	3	53	16	48	58	13	38	2	32	8
Sig_18_Blood	1	4	2	0	0	0	2	0	0	0	0	0.0	0	0	0.0	0	0	0	0	0	0	0	0	0	0	0	0
Sig_18_Blood.deconflicted_germline	1	395	0	369	0	26	0	0	0	275	94	2.93	275	94	2.93	13	64	9	10	13	75	71	24	8	7	65	10
custom_Sig_18_tumor_normal.manta.diploid_sv	1	6	0	0	0	3	1	0	0	0	0	0.0	0	0	0.0	0	0	0	0	0	0	0	0	0	0	0	0
custom_Sig_18_tumor_normal.manta.somatic_sv	2	0	0	0	0	0	0	0	0	0	0	0.0	0	0	0.0	0	0	0	0	0	0	0	0	0	0	0	0
custom_Sig_18_tumor_normal.strelka.somatic_indels	2	88	0	0	0	88	0	0	0	0	0	0.0	0	0	0.0	0	0	0	0	0	0	0	0	0	0	0	0
custom_Sig_18_tumor_normal.strelka.somatic_snvs	2	237	0	237	0	0	0	0	0	131	106	1.24	131	106	1.24	10	16	4	32	11	46	43	8	18	5	26	18