Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/359a0ed1f04c3451c78939ab676afd/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/edcc998f347eca1dd70ec8970f217a/custom_Sig_18_tumor_normal.manta.candidate_small_indels.vcf.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/edcc998f347eca1dd70ec8970f217a/custom_Sig_18_tumor_normal.manta.candidate_small_indels.vcf.gz.tbi
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/regression_padded_intervals/scatter/chr21_5117003-5117331.bed.gz.tbi
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_tissue/Sig_18_tissue.recalibrated.bam
Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_tissue/Sig_18_tissue.recalibrated.bam.bai
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/regression_padded_intervals/scatter/chr21_5117003-5117331.bed.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/359a0ed1f04c3451c78939ab676afd/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_Blood/Sig_18_Blood.recalibrated.bam.bai
Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/Sig_18_Blood/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (12 inputs)
Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:
/var/tmp/strelka/runWorkflow.py
[2026-06-08T20:35:12.342394Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T20:35:12.343320Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T20:35:12.343348Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T20:35:12.343354Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T20:35:12.343358Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXnt6PGv'
[2026-06-08T20:35:12.343362Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T20:35:12.343370Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T20:35:12.343374Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T20:35:12.343377Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T20:35:12.343381Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T20:35:12.343385Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T20:35:12.343389Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T20:35:12.343392Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T20:35:12.343396Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T20:35:12.344500Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T20:35:12.344571Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T20:35:12.350560Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T20:35:12.351263Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T20:35:12.351488Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T20:35:12.351650Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T20:35:12.351793Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.352822Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.355219Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.355452Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.355528Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.355661Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.355745Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.355960Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T20:35:12.356120Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.356196Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.368504Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.368592Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.368659Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.368745Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.368821Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.368890Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.368988Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.369064Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.369133Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T20:35:12.369175Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T20:35:12.401475Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.401745Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.402485Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.403235Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.405935Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.406304Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T20:35:12.409070Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T20:35:12.410782Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T20:35:12.413142Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T20:35:12.520980Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.521276Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T20:35:12.523921Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T20:35:12.585278Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:16.108157Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:16.108497Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T20:35:16.111068Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T20:35:16.172726Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:16.172994Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T20:35:16.175273Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T20:35:16.238144Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:18.256324Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:18.256625Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T20:35:18.259109Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T20:35:18.289693Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:47.863126Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:47.863554Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T20:35:47.866015Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T20:35:47.895687Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:47.895834Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:47.895951Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T20:35:47.897232Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:35:47.898061Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:35:47.898277Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T20:35:47.900879Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T20:35:47.901783Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T20:35:47.930259Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:47.930322Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:47.930343Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:47.930515Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:35:47.930835Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:35:47.933393Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T20:35:47.934047Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T20:35:47.963418Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:47.963484Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:47.963653Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T20:35:47.966147Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T20:35:47.995610Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T20:36:00.515588Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T20:36:15.463287Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T20:36:15.463287Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner]
[2026-06-08T20:36:15.463287Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] workflow version: 2.9.10
[2026-06-08T20:36:15.463380Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner]
[2026-06-08T20:36:15.463388Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T20:36:15.463396Z] [nf-cb359a0ed1f04c3451c78939ab676afd-be8c8-hs64d] [691_1] [WorkflowRunner] Elapsed time for full workflow: 63 sec