.command.out - Workdir - NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (HCC1395_BL)

File Info

Filename: .command.out
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/5a1f003e588603f457086de7e7a86c/.command.out
Size: 445 bytes
Task: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (HCC1395_BL)
Attempt

Content

[INFO] Reading target VCF: HCC1395_BL.GERMLINE.merged.vcf.gz
[INFO] Reading source VCF: chip_pon.chip_pon.harmonized.vcf.gz
[INFO] Adding header fields with prefix 'CHIP_PON' for: FRACTION
[INFO] Building source variant lookup...
[INFO] Found 365410 variants in source VCF
[INFO] Processing target variants and merging characteristics...
[INFO] Complete! Processed 254 variants, matched 196 (77.2%)
[SUCCESS] VCF merging completed successfully!