#!/bin/bash -Ceuo pipefail
bcftools \
    annotate \
    -x FILTER -Oz --write-index=tbi \
     \
     \
    --output HCC1395_BL.stripped.vcf.gz \
    --threads 1 \
    HCC1395_BL.survivors.vcf.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER":
    bcftools: $( bcftools --version |& sed '1!d; s/^.*bcftools //' )
END_VERSIONS