.command.out - Workdir - NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (Sig_18_Blood)

File Info

Filename: .command.out
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/d4b9f9679081ab96e115fbce55ff83/.command.out
Size: 457 bytes
Task: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_GERMLINE (Sig_18_Blood)
Attempt

Content

[INFO] Reading target VCF: Sig_18_Blood.chip.harmonized.vcf.gz
[INFO] Reading source VCF: Sig_18_Blood.germline.harmonized.vcf.gz
[INFO] Adding header fields with prefix 'GERMLINE' for: GT, AD, DP, GQ, QD
[INFO] Building source variant lookup...
[INFO] Found 395 variants in source VCF
[INFO] Processing target variants and merging characteristics...
[INFO] Complete! Processed 321 variants, matched 34 (10.6%)
[SUCCESS] VCF merging completed successfully!