Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/8cea654bac0439d443e20dc6c9baec/Sig_18_Blood.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/61c4896b8184206c37cc8ea8b0aaa6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/61c4896b8184206c37cc8ea8b0aaa6/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/regression_intervals/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed
==> STAGING COMPLETE (4 inputs)


VCFtools - 0.1.16
(C) Adam Auton and Anthony Marcketta 2009

Parameters as interpreted:
	--gzvcf Sig_18_Blood.vcf.gz
	--out Sig_18_Blood
	--TsTv-by-count

Using zlib version: 1.2.11
Warning: Expected at least 2 parts in FORMAT entry: ID=ZYGOSITY,Number=1,Type=String,Description="Variant Zygosity: Homozygous: HOM, Heterozygous: HET, Hemizygous: HEMI">
Warning: Expected at least 2 parts in FORMAT entry: ID=ZYGOSITY,Number=1,Type=String,Description="Variant Zygosity: Homozygous: HOM, Heterozygous: HET, Hemizygous: HEMI">
After filtering, kept 1 out of 1 Individuals
Outputting Ts/Tv by Alternative Allele Count
After filtering, kept 4 out of a possible 4 Sites
Run Time = 0.00 seconds
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