Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/HCC1395_tumor/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/9fa8db4faa1a42817bfa455704d368/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/HCC1395_tumor/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/regression_padded_intervals/scatter/chr21_5117003-5117331.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/HCC1395_BL/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/01_preprocess_regression_fastqs/regression_preprocess__60492e9--20260310-034416/alignments/recalibrated/HCC1395_BL/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/4e02ab4e557de4cd6b33e3cccf64cd/HCC1395_tumor_vs_HCC1395_BL.manta.candidate_small_indels.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/4e02ab4e557de4cd6b33e3cccf64cd/HCC1395_tumor_vs_HCC1395_BL.manta.candidate_small_indels.vcf.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/regression_padded_intervals/scatter/chr21_5117003-5117331.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/9fa8db4faa1a42817bfa455704d368/.command.run
==> STAGING COMPLETE (12 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXKNeeM6/chr21_5117003-5117331.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXKNeeM6/chr21_5117003-5117331.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXKNeeM6/chr21_5117003-5117331.bed.gz.tbi
[2026-06-08T20:35:13.879146Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T20:35:13.881181Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T20:35:13.881212Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T20:35:13.881219Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T20:35:13.881224Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXKNeeM6'
[2026-06-08T20:35:13.881228Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T20:35:13.881234Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T20:35:13.881238Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T20:35:13.881242Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T20:35:13.881245Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T20:35:13.881249Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T20:35:13.881253Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T20:35:13.881256Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T20:35:13.881260Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T20:35:13.882609Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T20:35:13.882731Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T20:35:13.888699Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T20:35:13.889816Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T20:35:13.890102Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T20:35:13.890368Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T20:35:13.890527Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T20:35:13.891939Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T20:35:13.892420Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T20:35:13.892605Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T20:35:13.892689Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T20:35:13.893510Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T20:35:13.895030Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T20:35:13.895824Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T20:35:13.896035Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T20:35:13.896317Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T20:35:13.910822Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T20:35:13.910921Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T20:35:13.910989Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T20:35:13.911076Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:35:13.911412Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:35:13.911606Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:35:13.911674Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T20:35:13.911750Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T20:35:13.911820Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T20:35:13.911863Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T20:35:13.928506Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:13.928879Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T20:35:13.929501Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T20:35:13.930351Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T20:35:13.931501Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T20:35:13.934797Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T20:35:13.937365Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T20:35:13.938285Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T20:35:14.048491Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:14.048811Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T20:35:14.056012Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T20:35:14.116807Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:15.684271Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:15.684665Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T20:35:15.687781Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T20:35:15.749046Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:15.749361Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T20:35:15.752321Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T20:35:15.813871Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:27.719426Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T20:35:27.732058Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:27.732136Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:27.732488Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T20:35:27.734528Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T20:35:27.735150Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T20:35:27.737179Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T20:35:27.766919Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:27.766999Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:27.767118Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:27.767248Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T20:35:27.767823Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:35:27.768496Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:35:27.771219Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T20:35:27.772463Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T20:35:27.773391Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T20:35:27.801791Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:27.801870Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:27.801892Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:27.802092Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:35:27.802400Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T20:35:27.805035Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T20:35:27.806063Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T20:35:27.834260Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:27.834334Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:27.834509Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T20:35:27.836803Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T20:35:27.866543Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T20:35:32.789840Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T20:35:47.000588Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T20:35:47.000588Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] 
[2026-06-08T20:35:47.000588Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T20:35:47.000667Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] 
[2026-06-08T20:35:47.000677Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T20:35:47.000684Z] [nf-7c9fa8db4faa1a42817bfa455704d368-68874-8w845] [705_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec