cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_tumor --normal_sample HCC1395_BL --max_event_count 5 -v HCC1395_tumor_vs_HCC1395_BL.tnseq.vcf.gz --contamination HCC1395_tumor_vs_HCC1395_BL.tnseq.contamination_data.tsv --tumor_segments HCC1395_tumor_vs_HCC1395_BL.tnseq.segments --orientation_priors HCC1395_tumor_vs_HCC1395_BL.tnseq.orientation_data.tsv HCC1395_tumor_vs_HCC1395_BL.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:243000001, elapsed 0.1s, est remaining 1.8s, peak mem 816MB, user 0.2s, sys 0.4s, output queue size 150
progress 10% @chr2:171000001, elapsed 0.2s, est remaining 1.5s, peak mem 816MB, user 0.5s, sys 2.1s, output queue size 310
progress 15% @chr2:190000001, elapsed 0.2s, est remaining 1.3s, peak mem 816MB, user 0.9s, sys 5.4s, output queue size 472
progress 20% @chr4:91000001, elapsed 0.3s, est remaining 1.2s, peak mem 816MB, user 1.5s, sys 10.3s, output queue size 634
progress 25% @chr4:60000001, elapsed 0.4s, est remaining 1.1s, peak mem 816MB, user 1.8s, sys 14.5s, output queue size 795
progress 30% @chr4:189000001, elapsed 0.4s, est remaining 1.0s, peak mem 816MB, user 2.5s, sys 21.0s, output queue size 957
progress 35% @chr6:56000001, elapsed 0.5s, est remaining 0.9s, peak mem 816MB, user 3.5s, sys 24.8s, output queue size 1118
progress 40% @chr8:90000001, elapsed 0.5s, est remaining 0.8s, peak mem 816MB, user 4.1s, sys 28.2s, output queue size 1278
progress 45% @chr8:79000001, elapsed 0.6s, est remaining 0.7s, peak mem 816MB, user 4.7s, sys 32.2s, output queue size 1440
progress 50% @chr10:10000001, elapsed 0.7s, est remaining 0.7s, peak mem 816MB, user 5.3s, sys 36.3s, output queue size 1601
progress 55% @chr12:10000001, elapsed 0.7s, est remaining 0.6s, peak mem 816MB, user 6.6s, sys 41.3s, output queue size 1764
progress 60% @chr13:46000001, elapsed 0.8s, est remaining 0.5s, peak mem 816MB, user 7.0s, sys 47.0s, output queue size 1925
progress 65% @chr13:111000001, elapsed 0.9s, est remaining 0.5s, peak mem 816MB, user 7.2s, sys 60.1s, output queue size 2088
progress 70% @chr15:52000001, elapsed 1.0s, est remaining 0.4s, peak mem 816MB, user 7.4s, sys 71.3s, output queue size 2250
progress 75% @chr18:36000001, elapsed 1.0s, est remaining 0.3s, peak mem 816MB, user 7.6s, sys 83.4s, output queue size 2412
progress 80% @chr22:42000001, elapsed 1.1s, est remaining 0.3s, peak mem 816MB, user 7.8s, sys 96.7s, output queue size 2574
progress 85% @chr16:27000001, elapsed 1.2s, est remaining 0.2s, peak mem 816MB, user 8.0s, sys 109.8s, output queue size 2660
progress 90% @chrY:54000001, elapsed 1.3s, est remaining 0.1s, peak mem 816MB, user 8.2s, sys 122.9s, output queue size 3130
progress 95% @chr6_GL000254v2_alt:3000001, elapsed 1.3s, est remaining 0.1s, peak mem 816MB, user 8.5s, sys 141.0s, output queue size 3946
progress 100% @HLA-B*55:24:1, elapsed 1.8s, est remaining 0.0s, peak mem 816MB, user 9.0s, sys 191.0s, output queue size 6399
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 71258
output file size: 60122
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 741 calls 0.005 user 0.002 sys 0.022 real
"predict_filter": 247 calls 0.000 user 0.005 sys 0.039 real
advance: 3219322 calls 0.968 user 60.325 sys 62.867 real
done: 1 calls 0.002 user 0.000 sys 0.003 real
execute: 1 calls 0.011 user 0.008 sys 2.281 real
fetch_ref: 648 calls 0.005 user 0.016 sys 0.106 real
idle: 20633 calls 0.691 user 0.578 sys 914.571 real
init: 1 calls 0.612 user 0.208 sys 1.121 real
overall: 855773184 mem 11.102 user 198.933 sys 4.304 real