.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (HCC1395_tumor)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/682feb7984df0d49a15fa150f316ec/.command.log
Size: 837 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (HCC1395_tumor)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/6ca2c4635785637a8d4be34879fe16/HCC1395_tumor_probes.tsv.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/682feb7984df0d49a15fa150f316ec/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/somatic_cnv/norm_reference/sex_calls.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/682feb7984df0d49a15fa150f316ec/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/somatic_cnv/norm_reference/batch_reference.parquet
==> STAGING COMPLETE (5 inputs)

Loaded 4,819 probes for HCC1395_tumor
  5-feature GAM: R²=0.8672
  Wrote HCC1395_tumor_normalized.parquet
  Wrote feature stats to HCC1395_tumor_gam_stats.json
  Done in 0.4s