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==> STAGING COMPLETE (19 inputs)

INFO: Loading models...
INFO: Reading VCF: Sig_18_Blood.entropy.vcf.gz
INFO: Loaded 395 variants (369 SNVs, 26 INDELs)
INFO:   INDEL entropy: 24 present, 2 missing (using -1 sentinel)
INFO: Annotating with BED files...
INFO:   Blacklist hits: 8
INFO:   Low depth hits: 0
INFO:   Boosted exon hits: 90
INFO:   SNV FP region hits: 32
INFO:   INDEL FP region hits: 10
INFO:   INDEL FP rate lookups (TSV): 15241 variant keys loaded
INFO:   RepeatMasker hits: 30
INFO: Applying models...
INFO: Results: 357 PASS (339 SNV, 18 INDEL), 38 RF_FAIL
INFO: Writing output VCF: Sig_18_Blood.haplotyper_rf.rf_filtered.vcf.gz
INFO: Done!