Processing 1 T/N pair(s)...
  Enabled: mode=ascn, joint-seg, purity-estimation, adaptive-pen, weighted-seg, fit=clonal-decomp
  Loading gene annotations from Homo_sapiens.GRCh38.110.chr21.gtf.gz...
  Loaded 898 gene annotations
  [1/1] HCC1395_tumor_vs_HCC1395_BL... MAD=0.1651, pen_mult=0.68  fit_multiclone_select: n_peaks=1, n_segs=4, dipLogR=0.0260
  Greedy search: 1 model combinations
  n_clones=1 best[0]: sum_rho=0.9900, cost=0.73529, ICL=-5.00, converged=True, n_iter=2, init=[0.9970], phi=[0.9900]
  SELECTED (best-ICL): n_clones=1, ICL=-5.00, purity=0.9900 (1 models evaluated)
Wrote 4630 probes to HCC1395_tumor_vs_HCC1395_BL_probe_agg.tsv.gz
 4 segments, 2 events, 244 genes
Wrote 4 segments (2 events) to HCC1395_tumor_vs_HCC1395_BL_segments.tsv
Wrote 4 segments to HCC1395_tumor_vs_HCC1395_BL.seg
Wrote 1 metrics rows to HCC1395_tumor_vs_HCC1395_BL_metrics.tsv
Wrote 244 gene entries to HCC1395_tumor_vs_HCC1395_BL_gene_cnv.tsv.gz
Wrote somatic VCF to HCC1395_tumor_vs_HCC1395_BL_somatic.vcf

Single-sample analysis...
  HCC1395_tumor_vs_HCC1395_BL (tumor)...  fit_multiclone_select: n_peaks=1, n_segs=5, dipLogR=0.0300
  Greedy search: 1 model combinations
  n_clones=1 best[0]: sum_rho=0.0779, cost=0.00295, ICL=-24.48, converged=True, n_iter=2, init=[0.1250], phi=[0.0779]
  SELECTED (best-ICL): n_clones=1, ICL=-24.48, purity=0.0779 (1 models evaluated)
 5 segments, 5 events
Wrote 5 segments to ./tumor_only/HCC1395_tumor_vs_HCC1395_BL.seg
Wrote 4630 probes to ./tumor_only/HCC1395_tumor_vs_HCC1395_BL_probe_agg.tsv.gz
  HCC1395_tumor_vs_HCC1395_BL (blood)... 1 segments, 0 events
Wrote 1 segments to ./blood_only/HCC1395_tumor_vs_HCC1395_BL.seg
Wrote 4630 probes to ./blood_only/HCC1395_tumor_vs_HCC1395_BL_probe_agg.tsv.gz
Single-sample analysis complete.