|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (HCC1395_BL)
|
6s |
5s |
0s |
0s |
31.7 MB |
4218% |
266.1 KB |
1.3 KB |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (Sig_18_Blood)
|
7s |
5s |
0s |
1s |
31.4 MB |
4393% |
268.3 KB |
1.4 KB |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (HCC1395_BL)
|
11s |
9s |
0s |
1s |
17.4 MB |
4450% |
31.3 MB |
328.5 KB |
0 bytes |
336.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (Sig_18_Blood)
|
11s |
9s |
0s |
1s |
17.3 MB |
4413% |
31.3 MB |
340.0 KB |
0 bytes |
348.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (HCC1395_BL;HCC1395_BL)
|
20s |
2s |
8s |
10s |
8.0 MB |
100% |
3.2 GB |
268.0 KB |
0 bytes |
272.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (Sig_18_Blood;Sig_18_Blood)
|
20s |
2s |
8s |
10s |
53.0 MB |
100% |
3.3 GB |
404.7 KB |
0 bytes |
412.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (HCC1395_BL;sentieon_haplotyper)
|
4s |
2s |
- |
- |
3.2 MB |
78% |
147.6 KB |
5.2 KB |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (Sig_18_Blood;sentieon_haplotyper)
|
4s |
2s |
- |
- |
3.2 MB |
117% |
149.9 KB |
5.2 KB |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BGZIPTABIX_GERMLINE_CNV (HCC1395_BL;null)
|
6s |
5s |
- |
- |
3.3 MB |
132% |
126.7 KB |
5.3 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BGZIPTABIX_GERMLINE_CNV (Sig_18_Blood;null)
|
6s |
5s |
- |
- |
3.3 MB |
69% |
126.7 KB |
5.3 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:GERMLINE_CNV (HCC1395_BL)
|
2m 30s |
2m 6s |
15s |
8s |
406.7 MB |
183% |
3.2 GB |
187.7 KB |
0 bytes |
196.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:GERMLINE_CNV (Sig_18_Blood)
|
2m 31s |
2m 7s |
15s |
8s |
408.1 MB |
183% |
3.2 GB |
187.7 KB |
0 bytes |
196.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (custom_Sig_18_tumor_normal)
|
3m 34s |
2m 13s |
1m 11s |
10s |
2.1 GB |
156% |
9.5 GB |
6.0 MB |
0 bytes |
5.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (HCC1395_tumor_vs_HCC1395_BL)
|
3m 2s |
2m 13s |
39s |
10s |
2.1 GB |
202% |
6.5 GB |
5.6 MB |
0 bytes |
5.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (custom_Sig_18_tumor_normal)
|
21s |
17s |
3s |
1s |
158.6 MB |
857% |
75.3 MB |
68.3 KB |
0 bytes |
84.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (HCC1395_tumor_vs_HCC1395_BL)
|
22s |
18s |
3s |
1s |
157.3 MB |
1051% |
75.3 MB |
68.4 KB |
0 bytes |
84.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (custom_Sig_18_tumor_normal)
|
6s |
2s |
3s |
1s |
160.9 MB |
1139% |
75.3 MB |
69.3 KB |
0 bytes |
84.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (HCC1395_tumor_vs_HCC1395_BL)
|
6s |
2s |
2s |
2s |
167.9 MB |
1236% |
75.3 MB |
69.7 KB |
0 bytes |
84.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_GENEMETRICS (custom_Sig_18_tumor_normal)
|
21s |
17s |
2s |
2s |
163.2 MB |
1080% |
75.4 MB |
68.0 KB |
0 bytes |
84.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_GENEMETRICS (HCC1395_tumor_vs_HCC1395_BL)
|
22s |
18s |
3s |
1s |
161.0 MB |
981% |
75.5 MB |
68.0 KB |
0 bytes |
84.0 KB |
1 |