succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:WHATSHAP_TNSEQ (custom_Sig_18_tumor_normal:chr21) 2m 2s 3s 1m 50s 9s 312.7 MB 100% 776.2 MB 492.9 KB 0 bytes 500.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:WHATSHAP_TNSEQ (HCC1395_tumor_vs_HCC1395_BL:chr21) 1m 2s 9s 43s 10s 160.3 MB 100% 415.0 MB 413.4 KB 0 bytes 420.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_CONTAMINATION (HCC1395_tumor_vs_HCC1395_BL) 8s 2s 4s 1s 85.7 MB 671% 27.2 MB 715 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_CONTAMINATION (Sig_18_tissue_vs_Sig_18_Blood) 16s 2s 11s 2s 86.9 MB 312% 29.7 MB 715 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_BL) 2m 15s 2m 2s 3s 9s 368.6 MB 326% 147.9 MB 1.3 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_tumor) 2m 16s 2m 3s 3s 9s 532.4 MB 283% 183.4 MB 2.2 MB 0 bytes 2.2 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_Blood) 2m 15s 2m 2s 3s 9s 624.5 MB 305% 157.9 MB 1.5 MB 0 bytes 1.5 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_tissue) 2m 18s 2m 3s 5s 9s 871.9 MB 209% 260.4 MB 4.5 MB 34.9 MB 4.5 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (HCC1395_BL;SNP_GRCh38_hg38_wChr) 1m 47s 1m 27s 11s 9s 493.9 MB 490% 4.1 GB 832.8 KB 0 bytes 208.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (HCC1395_tumor;SNP_GRCh38_hg38_wChr) 1m 50s 1m 28s 12s 10s 494.6 MB 442% 4.5 GB 847.2 KB 0 bytes 216.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (Sig_18_Blood;SNP_GRCh38_hg38_wChr) 1m 46s 1m 27s 11s 8s 416.5 MB 520% 3.9 GB 830.3 KB 0 bytes 208.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (Sig_18_tissue;SNP_GRCh38_hg38_wChr) 1m 52s 1m 27s 15s 10s 491.4 MB 381% 4.8 GB 851.1 KB 48.9 MB 216.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:NGSCHECKMATE_NCM (1) 23s 13s - - 3.2 MB 3145% 12.1 MB 859.2 KB 0 bytes 900.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_BL) 2m 16s 1m 38s 29s 9s 1.9 GB 105% 167.1 MB 6.1 MB 147.6 MB 6.2 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_tumor) 2m 17s 1m 38s 30s 9s 1.9 GB 111% 333.5 MB 9.7 MB 287.6 MB 9.7 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (Sig_18_Blood) 2m 14s 1m 36s 29s 9s 1.9 GB 107% 213.3 MB 7.4 MB 199.1 MB 7.4 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (Sig_18_tissue) 2m 21s 1m 37s 34s 10s 1.9 GB 123% 720.6 MB 14.8 MB 677.3 MB 14.9 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_BL) 1m 41s 1m 28s 3s 10s 8.9 MB 129% 155.6 MB 125.8 KB 0 bytes 128.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_tumor) 1m 45s 1m 27s 8s 10s 9.1 MB 129% 318.0 MB 131.5 KB 0 bytes 132.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_Blood) 1m 40s 1m 27s 3s 10s 9.0 MB 133% 199.3 MB 128.0 KB 0 bytes 128.0 KB 1
326 items found |
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