.command.sh - Workdir - NFCORE_SAREK:SAREK:VARIANT_QC_TO_CSV (variant_qc_csv)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/c4e84e8d07e58b6ef168d145fb8f06/.command.sh
Size: 276 bytes
Task: NFCORE_SAREK:SAREK:VARIANT_QC_TO_CSV (variant_qc_csv)
Attempt

Content

#!/bin/bash -Ceuo pipefail
variant_qc_to_csv.py \
        -i variant_qc.json \
        -o variant_qc.csv

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:VARIANT_QC_TO_CSV":
    python: $(python --version | sed 's/Python //g')
    variant_qc_to_csv: 1.0.0
END_VERSIONS