.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:FILTER_TNSEQ_VCF_FOR_SOMATIC (HCC1395_tumor_vs_HCC1395_BL)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/dfe8c4d56a9459154869ff472d9bd9/.command.log
Size: 709 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:FILTER_TNSEQ_VCF_FOR_SOMATIC (HCC1395_tumor_vs_HCC1395_BL)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/99c73af4c36e512fec6a6561b81094/HCC1395_tumor_vs_HCC1395_BL.tnseq.filtered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/dfe8c4d56a9459154869ff472d9bd9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/dfe8c4d56a9459154869ff472d9bd9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/99c73af4c36e512fec6a6561b81094/HCC1395_tumor_vs_HCC1395_BL.tnseq.filtered.vcf.gz
==> STAGING COMPLETE (4 inputs)

ls: *.vcf: No such file or directory
ls: *.bcf: No such file or directory
ls: *.bcf.gz: No such file or directory
ls: *.csi: No such file or directory