.command.err - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MIMSI_ANALYZE (HCC1395_tumor_vs_HCC1395_BL)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/6fa8e35b23558eaa625bcee67ce3be/.command.err
Size: 3.4 KB
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MIMSI_ANALYZE (HCC1395_tumor_vs_HCC1395_BL)
Attempt

Content

[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recalibrated.bam.baiThe index file is older than the data file: HCC1395_tumor.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/HCC1395_BL.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: normal/HCC1395_BL.recalibrated.bam.bai[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: normal/HCC1395_BL.recalibrated.bam.baiThe index file is older than the data file: normal/HCC1395_BL.recalibrated.bam.bai
The index file is older than the data file: normal/HCC1395_BL.recalibrated.bam.baiThe index file is older than the data file: normal/HCC1395_BL.recalibrated.bam.bai



[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: normal/HCC1395_BL.recalibrated.bam.baiThe index file is older than the data file: normal/HCC1395_BL.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: normal/HCC1395_BL.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/HCC1395_BL.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/HCC1395_BL.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/HCC1395_BL.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/HCC1395_BL.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/HCC1395_BL.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/HCC1395_BL.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/HCC1395_BL.recalibrated.bam.bai
/usr/local/lib/python3.11/site-packages/main/evaluate_sample.py:47: UserWarning: Sample name 'HCC1395_tumor_vs_HCC1395_BL' has multiple '_' characters; cannot split into tumor/normal IDs. Reporting full name as tumor ID.
  warnings.warn(