File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/d382ac389db5807e52b462bbbde150/.command.err
Size
1017 bytes
Attempt
[INFO] Deconfliction mode: CHIP↔Germline, CHIP↔Somatic, Germline↔Somatic
[INFO] COSMIC heme: 113942 variants
[INFO] Building germline lookup...
[INFO] Germline lookup: 395 variants
[INFO] Building somatic lookup...
[INFO] Somatic lookup: 8 variants
[INFO] Processing CHIP VCF (Phase 1, pass 1: scoring decisions)...
[INFO] Processing CHIP VCF (Phase 1, pass 2: writing)...
[INFO] Writing deconflicted germline VCF...
[INFO] Germline: 0 variants suppressed
[INFO] Writing deconflicted somatic VCF...
[INFO] Somatic: 0 variants suppressed

[INFO] === Deconfliction Summary ===
  CHIP variants processed:
    CHIP_PASS no conflict:   0
    CHIP ↔ Germline:         0
      → CHIP wins:           0
      → Germline wins:       0
      → Suppressed (grey):   0
    CHIP ↔ Somatic (suspect):0
    CHIP_FAIL pass-through:  321
    Multihit cap:            0
  Germline ↔ Somatic:        0
    → Germline wins:         0
    → Suppress both:         0
  Audit TSV: Sig_18_Blood.deconfliction_audit.tsv